Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree

被引：461
作者：
Yu, Guangchuang [1 ]
Lam, Tommy Tsan-Yuk [2 ,3 ]
Zhu, Huachen [2 ,3 ,4 ,5 ]
Guan, Yi [2 ,3 ,4 ,5 ]
机构：
[1] Southern Med Univ, Inst Bioinformat, Sch Basic Med Sci, Guangzhou, Guangdong, Peoples R China
[2] Univ Hong Kong, Sch Publ Hlth, State Key Lab Emerging Infect Dis, Hong Kong, Peoples R China
[3] Univ Hong Kong, Sch Publ Hlth, Influenza Res Ctr, Hong Kong, Peoples R China
[4] Shantou Univ, Joint Inst Virol Shantou Univ Univ Hong Kong, Shantou, Guangdong, Peoples R China
[5] Shenzhen Third Peoples Hosp, State Key Lab Emerging Infect Dis HKU Shenzhen Ba, Shenzhen, Guangdong, Peoples R China
来源：
MOLECULAR BIOLOGY AND EVOLUTION | 2018年 / 35卷 / 12期
基金：
美国国家卫生研究院;
关键词：
phylogeny; visualization; data integration; TOOL;
D O I：
10.1093/molbev/msy194
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after reordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context.
引用
收藏
页码：3041 / 3043
页数：3
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