GENETIC DIVERSITY AND POPULATION STRUCTURE OF POPULUS YUNNANENSIS REVEALED BY SSR MARKERS

被引:3
作者
Zhou, Anpei [1 ,2 ]
Zong, Dan [1 ,2 ]
Gan, Peihua [1 ,2 ]
Zhang, Yao [1 ,2 ]
Li, Dan [1 ,3 ]
He, Chengzhong [1 ,2 ,4 ]
机构
[1] Southwest Forestry Univ, Key Lab Forest Genet & Tree Improvement & Propaga, Kunming 650224, Yunnan, Peoples R China
[2] Southwest Forestry Univ, Key Lab Biodivers Conservat Southwest China, State Forestry Adm, Kunming 650224, Yunnan, Peoples R China
[3] Southwest Forestry Univ, Yunnan Acad Biodivers, Kunming 650224, Yunnan, Peoples R China
[4] Southwest Forestry Univ, Key Lab Forest Resources Conservat & Utilizat Sou, Minist Educ, Kunming 650224, Yunnan, Peoples R China
基金
中国国家自然科学基金;
关键词
Genetic diversity; Population structure; Genetic improvement; SSR; Populus yunnanensis; PAKISTAN; PROGRAM; MODEL; IDENTIFICATION; TRANSFORMATION; INFERENCE; GENOTYPES; DAVIDIANA; CULTIVARS; RESPONSES;
D O I
10.30848/RT132020-6(21)
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Populus yunnanensis, a native poplar in southwest China, is a potential candidate to improve the quality of poplars due to its high growth rate, wide adaptability, and strong disease-resistant ability. However, the genetic structure of P. yunnanensis has not been determined. To illustrate the genetic diversity and population structure of P. yunnanensis, 6 SSR markers, amplified from 208 specimens of 7 populations, were used in this study. In total, 35 alleles with a mean of 6 were acquired, and the genetic diversity was at a moderate level. Populations from Qujing (QJ) and Dali (DL) showed abundant genetic diversities, whereas the population from Lijiang (II) had low genetic diversities due to a relatively recent population bottleneck. Both Fstatistics and AMOVA results supported that the main genetic variation was attributed to individual differences within populations, and a high frequency gene flow (Nm = 5.560) occurred among populations. There was an overall increasing trend of genetic differences within populations from north to south and from east to west. Based on UPGMA, PCoA, and Bayesian analyses, populations from LJ, Liangshan (LS), QJ, and Zhaotong (ZT) were closely related to each other. A high barrier was found between the Kunming (KM) population and the Chuxiong (CX) population, and there was no correlated relationship (R = -0.159, P = 0.175) for the genetic and geographic distances between these two populations. We concluded that human activity was the decisive factor for shaping the present population distribution. Many potential resource types disappear at a fast rate, and the germplasm protection and scientific plan is imperative for breeding Populus and its genetic improvement.
引用
收藏
页码:2147 / 2155
页数:9
相关论文
共 50 条
[31]   Population structure and genetic diversity in elite sugar beet germplasm investigated with SSR markers [J].
Li, Jinquan ;
Schulz, Britta ;
Stich, Benjamin .
EUPHYTICA, 2010, 175 (01) :35-42
[32]   Assessment of the population structure and genetic diversity of Denizli chicken subpopulations using SSR markers [J].
Ozdemir, Demir ;
Cassandro, Martino .
ITALIAN JOURNAL OF ANIMAL SCIENCE, 2018, 17 (02) :312-320
[33]   Genetic diversity and population structure of Cucumis sativus L. by using SSR markers [J].
Aejaz Ahmad Dar ;
Reetika Mahajan ;
Padma Lay ;
Susheel Sharma .
3 Biotech, 2017, 7
[34]   Genetic diversity and population structure of Brassica oleracea germplasm in Ireland using SSR markers [J].
El-Esawi, Mohamed A. ;
Germaine, Kieran ;
Bourke, Paula ;
Malone, Renee .
COMPTES RENDUS BIOLOGIES, 2016, 339 (3-4) :133-140
[35]   Genetic diversity and population structure of the selected core set in Amaranthus using SSR markers [J].
Khaing, Aye Aye ;
Moe, Kyaw Thu ;
Chung, Jung-Wook ;
Baek, Hyung-Jin ;
Park, Yong-Jin .
PLANT BREEDING, 2013, 132 (02) :165-173
[36]   Genetic diversity and population structure of Armillaria luteovirens (Physalacriaceae) in Qinghai-Tibet Plateau revealed by SSR markers [J].
Xing, Rui ;
Gao, Qing-bo ;
Zhang, Fa-qi ;
Li, Yin-hu ;
Fu, Peng-cheng ;
Zhang, Jin-hua ;
Wang, Jiu-li ;
Khan, Gulza ;
Chen, Shi-long .
BIOCHEMICAL SYSTEMATICS AND ECOLOGY, 2014, 56 :1-7
[37]   Genetic diversity and population structure of elite cotton (Gossypium hirsutum L.) germplasm revealed by SSR markers [J].
Yunlei Zhao ;
Hongmei Wang ;
Wei Chen ;
Yunhai Li ;
Haiyan Gong ;
Xiaohui Sang ;
Feichao Huo ;
Fanchang Zeng .
Plant Systematics and Evolution, 2015, 301 :327-336
[38]   Genetic Diversity of Eggplant Revealed by SSR Markers [J].
Wang Qiu-jin ;
Zhao Fu-kuan ;
Sun Qing-Peng ;
Yang Ai-zhen .
2010 4TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING (ICBBE 2010), 2010,
[39]   Analysis of genetic diversity and population structure in endangered Populus wulianensis based on 18 newly developed EST-SSR markers [J].
Wu, Qichao ;
Zang, Fengqi ;
Ma, Yan ;
Zheng, Yongqi ;
Zang, Dekui .
GLOBAL ECOLOGY AND CONSERVATION, 2020, 24
[40]   Genetic diversity and population structure analysis of Indian garlic (Allium sativum L.) collectionusing SSR markers [J].
Kumar, Mukesh ;
Sharma, V. Rakesh ;
Kumar, Vipin ;
Sirohi, Ujjawal ;
Chaudhary, Veena ;
Sharma, Shiveta ;
Saripalli, Gautam ;
Naresh, R. K. ;
Yadav, Hemant Kumar ;
Sharma, Shailendra .
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, 2019, 25 (02) :377-386