Multi-database Retrieval Technology on CPSE-Bio

被引：0

作者：

Xie, Jiang ^{[1
]}

Yi, Ronggui ^{[1
]}

Tan, Jun ^{[1
]}

Cheng, Xiao ^{[1
]}

Dai, Dongbo ^{[1
]}

Zhang, Wu ^{[1
]}

机构：

[1] Shanghai Univ, Sch Comp Engn & Sci, Shanghai 200072, Peoples R China

来源：

2011 6TH INTERNATIONAL CONFERENCE ON COMPUTER SCIENCES AND CONVERGENCE INFORMATION TECHNOLOGY (ICCIT) | 2012年

关键词：

RESOURCE; UPDATE;

D O I：

暂无

中图分类号：

TP301 [理论、方法];

学科分类号：

081202 ;

摘要：

A vast number of Protein-Protein Interactions (PPIs) databases and different data formats among them make it difficult for researchers to research PPIs efficiently. We propose the Integrated Query Database (IQD) and Hot-Spot Database (HSD) on CPSE-Bio (PSE-Bio based on Cloud computing) to solve this problem in this paper. The IQD integrates several PPIs databases and researchers can retrieve PPIs in IQD one time rather than in other databases repeatedly. The HSD are also established in order to improve the efficiency of PPIs retrieval. Experimental results show that the IQD and HSD technologies enhance the PPIs retrieval efficiency remarkable.

引用

页码：380 / 384

页数：5

共 25 条

[1] The Biomolecular Interaction Network Database and related tools 2005 update [J].

Alfarano, C ;

Andrade, CE ;

Anthony, K ;

Bahroos, N ;

Bajec, M ;

Bantoft, K ;

Betel, D ;

Bobechko, B ;

Boutilier, K ;

Burgess, E ;

Buzadzija, K ;

Cavero, R ;

D'Abreo, C ;

Donaldson, I ;

Dorairajoo, D ;

Dumontier, MJ ;

Dumontier, MR ;

Earles, V ;

Farrall, R ;

Feldman, H ;

Garderman, E ;

Gong, Y ;

Gonzaga, R ;

Grytsan, V ;

Gryz, E ;

Gu, V ;

Haldorsen, E ;

Halupa, A ;

Haw, R ;

Hrvojic, A ;

Hurrell, L ;

Isserlin, R ;

Jack, F ;

Juma, F ;

Khan, A ;

Kon, T ;

Konopinsky, S ;

Le, V ;

Lee, E ;

Ling, S ;

Magidin, M ;

Moniakis, J ;

Montojo, J ;

Moore, S ;

Muskat, B ;

Ng, I ;

Paraiso, JP ;

Parker, B ;

Pintilie, G ;

Pirone, R .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D418-D424

[2]

[Anonymous], 2008, COMMUNICATIONS ACM

[3] Pathguide: a Pathway Resource List [J].

Bader, Gary D. ;

Cary, Michael P. ;

Sander, Chris .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D504-D506

[4] The universal protein resource (UniProt) [J].

Bairoch, A ;

Apweiler, R ;

Wu, CH ;

Barker, WC ;

Boeckmann, B ;

Ferro, S ;

Gasteiger, E ;

Huang, HZ ;

Lopez, R ;

Magrane, M ;

Martin, MJ ;

Natale, DA ;

O'Donovan, C ;

Redaschi, N ;

Yeh, LSL .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D154-D159

[5] Unequal evolutionary conservation of human protein interactions in interologous networks. [J].

Brown, Kevin V. ;

Jurisica, Igor .

GENOME BIOLOGY, 2007, 8 (05)

[6] Online predicted human interaction database [J].

Brown, KR ;

Jurisica, I .

BIOINFORMATICS, 2005, 21 (09) :2076-2082

[7] MINT, the molecular interaction database: 2009 update [J].

Ceol, Arnaud ;

Aryamontri, Andrew Chatr ;

Licata, Luana ;

Peluso, Daniele ;

Briganti, Leonardo ;

Perfetto, Livia ;

Castagnoli, Luisa ;

Cesareni, Gianni .

NUCLEIC ACIDS RESEARCH, 2010, 38 :D532-D539

[8] MatrixDB, the extracellular matrix interaction database [J].

Chautard, Emilie ;

Fatoux-Ardore, Marie ;

Ballut, Lionel ;

Thierry-Mieg, Nicolas ;

Ricard-Blum, Sylvie .

NUCLEIC ACIDS RESEARCH, 2011, 39 :D235-D240

[9]

Cheng X., 2011, HUMANCOM2011 PDC2011, V102, P591

[10]

Gallopoulos E., 1994, IEEE Computational Science and Engineering, V1, P11, DOI 10.1109/99.326669

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