DeepKneeExplainer: Explainable Knee Osteoarthritis Diagnosis From Radiographs and Magnetic Resonance Imaging

被引:33
作者
Karim, Md. Rezaul [1 ,2 ]
Jiao, Jiao [3 ]
Doehmen, Till [1 ,2 ]
Cochez, Michael [4 ,6 ]
Beyan, Oya [1 ,2 ]
Rebholz-Schuhmann, Dietrich [5 ]
Decker, Stefan [1 ,2 ]
机构
[1] Fraunhofer Inst Appl Informat Technol FIT, D-53754 St Augustin, Germany
[2] Rhein Westfal TH Aachen, Comp Sci Informat Syst & Databases 5, D-52056 Aachen, Germany
[3] Fraunhofer Inst Syst & Innovat Res ISI, D-76139 Karlsruhe, Germany
[4] Vrije Univ Amsterdam, Dept Comp Sci, Fac Sci, NL-1081 HV Amsterdam, Netherlands
[5] ZB MED Informat Ctr Life Sci, D-50931 Cologne, Germany
[6] Elseviers Discovery Lab, NL-1090 GH Amsterdam, Netherlands
关键词
Magnetic resonance imaging; Feature extraction; Diagnostic radiography; Osteoarthritis; Bones; Biomedical imaging; Knee; Knee osteoarthritis; biomedical imaging; deep neural networks; neural ensemble; explainability; Grad-CAM plus plus; layer-wise relevance propagation; SEGMENTATION; CLASSIFICATION; ENHANCEMENT; TRANSFORM; ALGORITHM;
D O I
10.1109/ACCESS.2021.3062493
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Osteoarthritis (OA) is a degenerative joint disease, which significantly affects middle-aged and elderly people. Although primarily identified via hyaline cartilage change based on medical images, technical bottlenecks like noise, artifacts, and modality impose an enormous challenge on high-precision, objective, and efficient early quantification of OA. Owing to recent advancements, approaches based on neural networks (DNNs) have shown outstanding success in this application domain. However, due to nested non-linear and complex structures, DNNs are mostly opaque and perceived as black-box methods, which raises numerous legal and ethical concerns. Moreover, these approaches do not have the ability to provide the reasoning behind diagnosis decisions in the way humans would do, which poses an additional risk in the clinical setting. In this paper, we propose a novel explainable method for knee OA diagnosis based on radiographs and magnetic resonance imaging (MRI), which we called DeepKneeExplainer. First, we comprehensively preprocess MRIs and radiographs through the deep-stacked transformation technique against possible noises and artifacts that could contain unseen images for domain generalization. Then, we extract the region of interests (ROIs) by employing U-Net architecture with ResNet backbone. To classify the cohorts, we train DenseNet and VGG architectures on the extracted ROIs. Finally, we highlight class-discriminating regions using gradient-guided class activation maps (Grad-CAM++) and layer-wise relevance propagation (LRP), followed by providing human-interpretable explanations of the predictions. Comprehensive experiments based on the multicenter osteoarthritis study (MOST) cohorts, our approach yields up to 91% classification accuracy, outperforming comparable state-of-the-art approaches. We hope that our results will encourage medical researchers and developers to adopt explainable methods and DNN-based analytic pipelines towards an increasing acceptance and adoption of AI-assisted applications in the clinical practice for improved knee OA diagnoses.
引用
收藏
页码:39757 / 39780
页数:24
相关论文
共 92 条
[1]  
Agarwal TK, 2014, IEEE INT ADV COMPUT, P964, DOI 10.1109/IAdCC.2014.6779453
[2]   RADIOGRAPHIC ASSESSMENT OF PROGRESSION IN OSTEOARTHRITIS [J].
ALTMAN, RD ;
FRIES, JF ;
BLOCH, DA ;
CARSTENS, J ;
COOKE, D ;
GENANT, H ;
GOFTON, P ;
GROTH, H ;
MCSHANE, DJ ;
MURPHY, WA ;
SHARP, JT ;
SPITZ, P ;
WILLIAMS, CA ;
WOLFE, F .
ARTHRITIS AND RHEUMATISM, 1987, 30 (11) :1214-1225
[3]   Osteoarthritis Severity Determination using Self Organizing Map Based Gabor Kernel [J].
Anifah, L. ;
Purnomo, M. H. ;
Mengko, T. L. R. ;
Purnama, I. K. E. .
2ND INTERNATIONAL CONFERENCE ON INNOVATION IN ENGINEERING AND VOCATIONAL EDUCATION, 2018, 306
[4]   Osteoarthritis classification using self organizing map based on gabor kernel and contrast-limited adaptive histogram equalization [J].
Anifah, Lilik ;
Purnama, I. Ketut Eddy ;
Hariadi, Mochamad ;
Purnomo, Mauridhi Hery .
Open Biomedical Engineering Journal, 2013, 7 (01) :18-28
[5]  
Antony J., 2017, Lecture Notes in Computer Science, P376, DOI [DOI 10.1007/978-3-319-62416, 10.1007/978-3-319-62416-7_27, DOI 10.1007/978-3-319-62416-727]
[6]  
Antony J, 2016, INT C PATT RECOG, P1195, DOI 10.1109/ICPR.2016.7899799
[7]   On Pixel-Wise Explanations for Non-Linear Classifier Decisions by Layer-Wise Relevance Propagation [J].
Bach, Sebastian ;
Binder, Alexander ;
Montavon, Gregoire ;
Klauschen, Frederick ;
Mueller, Klaus-Robert ;
Samek, Wojciech .
PLOS ONE, 2015, 10 (07)
[8]  
Baratloo A, 2015, EMERGENCY, V3, P48
[9]  
BEDI SS, 2013, INT J ADV RES COMPUT, V2, P267
[10]   Diagnosis of osteoarthritis: Imaging [J].
Braun, Hillary J. ;
Gold, Garry E. .
BONE, 2012, 51 (02) :278-288