Estimation of the reproduction number and early prediction of the COVID-19 outbreak in India using a statistical computing approach

被引:13
作者
Kanagarathinam, Karthick [1 ]
Sekar, Kavaskar [2 ]
机构
[1] GMR Inst Technol, Dept EEE, Gmr Nagar 532127, Rajam, India
[2] Panimalar Engn Coll, Dept EEE, Chennai, Tamil Nadu, India
来源
EPIDEMIOLOGY AND HEALTH | 2020年 / 42卷
关键词
Basic reproduction number; COVID-19; Forecasting; Statistical computing; TRANSMISSION; MODEL;
D O I
10.4178/epih.e2020028
中图分类号
R1 [预防医学、卫生学];
学科分类号
1004 ; 120402 ;
摘要
Coronavirus disease 2019 (COVID-19), which causes severe respiratory illness, has become a pandemic. The World Health Organization has declared it a public health crisis of international concern. We developed a susceptible, exposed, infected, recovered (SEM) model for COVID-19 to show the importance of estimating the reproduction number (R-0). This work is focused on predicting the COVID-19 outbreak in its early stage in India based on an estimation of R-0. The developed model will help policymakers to take active measures prior to the further spread of COVID-19. Data on daily newly infected cases in India from March 2, 2020 to April 2, 2020 were to estimate R-0 using the earlyR package. The maximum-likelihood approach was used to analyze the distribution of R-0 values, and the bootstrap strategy was applied for resampling to identify the most likely R-0 value. We estimated the median value of R-0 to be 1.471 (95% confidence interval [CI],1.351 to 1.592) and predicted that the new case count may reach 39,382 (95% CI, 34,300 to 47,351) in 30 days.
引用
收藏
页数:5
相关论文
共 15 条
[1]   How will country-based mitigation measures influence the course of the COVID-19 epidemic? [J].
Anderson, Roy M. ;
Heesterbeek, Hans ;
Klinkenberg, Don ;
Hollingsworth, T. Deirdre .
LANCET, 2020, 395 (10228) :931-934
[2]  
Dietz K, 1993, Stat Methods Med Res, V2, P23, DOI 10.1177/096228029300200103
[3]   Systematic biases in disease forecasting - The role of behavior change [J].
Eksin, Ceyhun ;
Paarporn, Keith ;
Weitz, Joshua S. .
EPIDEMICS, 2019, 27 :96-105
[4]   Real-time forecasting of infectious disease dynamics with a stochastic semi-mechanistic model [J].
Funk, Sebastian ;
Camacho, Anton ;
Kucharski, Adam J. ;
Eggo, Rosalind M. ;
Edmunds, W. John .
EPIDEMICS, 2018, 22 :56-61
[5]  
Kamvar ZN, 2018, PROJECTIONS PROJECT
[6]   Global dynamics of SEIRS epidemic model with non-linear generalized incidences and preventive vaccination [J].
Khan, Muhammad Altaf ;
Badshah, Qaisar ;
Islam, Saeed ;
Khan, Ilyas ;
Shafie, Sharidan ;
Khan, Sher Afzal .
ADVANCES IN DIFFERENCE EQUATIONS, 2015,
[7]   Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus-Infected Pneumonia [J].
Li, Qun ;
Guan, Xuhua ;
Wu, Peng ;
Wang, Xiaoye ;
Zhou, Lei ;
Tong, Yeqing ;
Ren, Ruiqi ;
Leung, Kathy S. M. ;
Lau, Eric H. Y. ;
Wong, Jessica Y. ;
Xing, Xuesen ;
Xiang, Nijuan ;
Wu, Yang ;
Li, Chao ;
Chen, Qi ;
Li, Dan ;
Liu, Tian ;
Zhao, Jing ;
Liu, Man ;
Tu, Wenxiao ;
Chen, Chuding ;
Jin, Lianmei ;
Yang, Rui ;
Wang, Qi ;
Zhou, Suhua ;
Wang, Rui ;
Liu, Hui ;
Luo, Yinbo ;
Liu, Yuan ;
Shao, Ge ;
Li, Huan ;
Tao, Zhongfa ;
Yang, Yang ;
Deng, Zhiqiang ;
Liu, Boxi ;
Ma, Zhitao ;
Zhang, Yanping ;
Shi, Guoqing ;
Lam, Tommy T. Y. ;
Wu, Joseph T. ;
Gao, George F. ;
Cowling, Benjamin J. ;
Yang, Bo ;
Leung, Gabriel M. ;
Feng, Zijian .
NEW ENGLAND JOURNAL OF MEDICINE, 2020, 382 (13) :1199-1207
[8]  
Ministry of Health and Family Welfare Government of India, COVID 19 IND
[9]  
Myers MF, 2000, ADV PARASIT, V47, P309, DOI 10.1016/S0065-308X(00)47013-2
[10]   Serial interval of novel coronavirus (COVID-19) infections [J].
Nishiura, Hiroshi ;
Linton, Natalie M. ;
Akhmetzhanov, Andrei R. .
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 2020, 93 :284-286