Synapsable quadruplex-mediated fibers

被引:12
作者
Angel Mendez, Miguel [1 ,2 ]
Szalai, Veronika A. [1 ,3 ]
机构
[1] Univ Maryland Baltimore Cty, Dept Chem & Biochem, Baltimore, MD 21250 USA
[2] Univ San Francisco Quito, Cumbaya 17120084, Quito, Ecuador
[3] NIST, Ctr Nanoscale Sci & Technol, Gaithersburg, MD 20899 USA
来源
NANOSCALE RESEARCH LETTERS | 2013年 / 8卷
关键词
Guanine quartet; Guanine quadruplex; Atomic force microscopy; Nanowires; Nanofibers; DNA nanomaterials; Synapsable quadruplex; END-STACKING; FOLDING DNA; G-WIRE; HELICES; REPLICATION; ASSOCIATION; MICROSCOPY; COMPLEX;
D O I
10.1186/1556-276X-8-210
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
We have fabricated a DNA-based nanofiber created by self-assembly of guanine quadruplex (Hoogsteen base pairing) and double-stranded DNA (Watson-Crick base pairing). When duplexes containing a long stretch of contiguous guanines and single-stranded overhangs are incubated in potassium-containing buffer, the preformed duplexes create high molecular weight species that contain quadruplexes. In addition to observation of these larger species by gel electrophoresis, solutions were analyzed by atomic force microscopy to reveal nanofibers. Analysis of the atomic force microscopy images indicates that fibers form with lengths ranging from 250 to 2,000 nm and heights from 0.45 to 4.0 nm. This work is a first step toward the creation of new structurally heterogeneous (quadruplex/duplex), yet controllable, DNA-based materials exhibiting novel properties suitable for a diverse array of nanotechnology applications.
引用
收藏
页码:1 / 10
页数:10
相关论文
共 55 条
[11]   Polarizability of G4-DNA observed by electrostatic force microscopy measurements [J].
Cohen, Hezy ;
Sapir, Tomer ;
Borovok, Natalia ;
Molotsky, Tatiana ;
Di Felice, Rosa ;
Kotlyar, Alexander B. ;
Porath, Danny .
NANO LETTERS, 2007, 7 (04) :981-986
[12]  
Delrow JJ, 1998, BIOPOLYMERS, V45, P503, DOI 10.1002/(SICI)1097-0282(199806)45:7<503::AID-BIP4>3.3.CO
[13]  
2-#
[14]   Strain-dependence of the electronic properties in periodic quadruple helical G4-wires [J].
Di Felice, R ;
Calzolari, A ;
Garbesi, A ;
Alexandre, SS ;
Soler, JM .
JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (47) :22301-22307
[15]   Folding DNA into Twisted and Curved Nanoscale Shapes [J].
Dietz, Hendrik ;
Douglas, Shawn M. ;
Shih, William M. .
SCIENCE, 2009, 325 (5941) :725-730
[16]   Development of new functional nanostructures consisting of both DNA duplex and quadruplex [J].
Dutta, Kakoli ;
Fujimoto, Takeshi ;
Inoue, Mamiko ;
Miyoshi, Daisuke ;
Sugimoto, Naoki .
CHEMICAL COMMUNICATIONS, 2010, 46 (41) :7772-7774
[17]   End-stacking of copper cationic porphyrins on parallel-stranded guanine quadruplexes [J].
Evans, Sarah E. ;
Mendez, Miguel A. ;
Turner, Kevin B. ;
Keating, Loryn R. ;
Grimes, Ryan T. ;
Melchoir, Sarah ;
Szalai, Veronika A. .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2007, 12 (08) :1235-1249
[18]   Synapsable DNA double helices: Self-selective modules for assembling DNA superstructures [J].
Fahlman, RP ;
Sen, D .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (48) :11079-11085
[19]   Cation-regulated self-association of "synapsable" DNA duplexes [J].
Fahlman, RP ;
Sen, D .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 280 (02) :237-244
[20]   ABSOLUTE METHOD FOR THE DETERMINATION OF THE PERSISTENCE LENGTH OF NATIVE DNA FROM ELECTRON-MICROGRAPHS [J].
FRONTALI, C ;
DORE, E ;
FERRAUTO, A ;
GRATTON, E ;
BETTINI, A ;
POZZAN, MR ;
VALDEVIT, E .
BIOPOLYMERS, 1979, 18 (06) :1353-1373