Recent developments in the characterization of nucleic acids by liquid chromatography, capillary electrophoresis, ion mobility, and mass spectrometry (2010-2020)

被引:39
作者
Santos, Ines C. [1 ]
Brodbelt, Jennifer S. [1 ]
机构
[1] Univ Texas Austin, Dept Chem, 105 E 24th St, Austin, TX 78712 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
capillary electrophoresis; ion mobility; liquid chromatography; mass spectrometry; nucleic acids; COLLISION-INDUCED DISSOCIATION; CHEMICALLY-MODIFIED OLIGONUCLEOTIDES; INFRARED MULTIPHOTON DISSOCIATION; ELECTRON-CAPTURE DISSOCIATION; PHENYL GLYCIDYL ETHER; HYDROPHILIC-INTERACTION; ZONE-ELECTROPHORESIS; RIBONUCLEIC-ACIDS; PHOSPHOROTHIOATE OLIGONUCLEOTIDES; DNA-ADDUCTS;
D O I
10.1002/jssc.202000833
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
The development of new strategies for the analysis of nucleic acids has gained momentum due to the increased interest in using these biomolecules as drugs or drug targets. The application of new mass spectrometry ion activation techniques and the optimization of separation methods including liquid chromatography, capillary electrophoresis, and ion mobility have allowed more detailed characterization of nucleic acids and oligonucleotide therapeutics including confirmation of sequence, localization of modifications and interaction sites, and structural analysis as well as identification of failed sequences and degradation products. This review will cover tandem mass spectrometry methods as well as the recent developments in liquid chromatography, capillary electrophoresis, and ion mobility coupled to mass spectrometry for the analysis of nucleic acids and oligonucleotides.
引用
收藏
页码:340 / 372
页数:33
相关论文
共 185 条
[1]   GEL-ELECTROPHORESIS OF DNA [J].
AAIJ, C ;
BORST, P .
BIOCHIMICA ET BIOPHYSICA ACTA, 1972, 269 (02) :192-+
[2]  
Agrawal S, 2019, RSC DRUG DISCOV, V68, P1
[3]   QC in antisense oligo synthesis [J].
Agris, PF ;
Smith, S ;
Fu, C ;
Simkins, SG .
NATURE BIOTECHNOLOGY, 2002, 20 (09) :871-872
[4]   Analysis of oligonucleotides by HPLC-electrospray ionization mass spectrometry [J].
Apffel, A ;
Chakel, JA ;
Fischer, S ;
Lichtenwalter, K ;
Hancock, WS .
ANALYTICAL CHEMISTRY, 1997, 69 (07) :1320-1325
[5]   Structure and Dynamics of Oligonucleotides in the Gas Phase [J].
Arcella, Annalisa ;
Dreyer, Jens ;
Ippoliti, Emiliano ;
Ivani, Ivan ;
Portella, Guillem ;
Gabelica, Valerie ;
Carloni, Paolo ;
Orozco, Modesto .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2015, 54 (02) :467-471
[6]   Structure of Triplex DNA in the Gas Phase [J].
Arcella, Annalisa ;
Portella, Guillem ;
Luz Ruiz, Maria ;
Eritja, Ramon ;
Vilaseca, Marta ;
Gabelica, Valerie ;
Orozco, Modesto .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (15) :6596-6606
[7]   Formation of polynuclear copper complexes of guanine-based nucleobases in the gas phase studied by ESI-MS [J].
Ascenzi, Daniela ;
Franceschi, Pietro ;
Guella, Graziano ;
Tosi, Paolo .
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2013, 354 :303-311
[8]   B-DNA helix stability in a solvent-free environment [J].
Baker, Erin Shammel ;
Bowers, Michael T. .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2007, 18 (07) :1188-1195
[9]   G-quadruplexes in telomeric repeats are conserved in a solvent-free environment [J].
Baker, Erin Shammel ;
Bernstein, Summer L. ;
Gabelica, Valerie ;
De Pauw, Edwin ;
Bowers, Michael T. .
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2006, 253 (03) :225-237
[10]   Ammonium Ion Binding to DNA G-Quadruplexes: Do Electrospray Mass Spectra Faithfully Reflect the Solution-Phase Species? [J].
Balthasart, Francoise ;
Plavec, Janez ;
Gabelica, Valerie .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2013, 24 (01) :1-8