The complete chloroplast genome sequence of theManglietia longirostrataSima, a rare and endemic species to china

被引:1
作者
Luo, Wei [1 ]
Li, Zhuoran [1 ]
Sima, Yongkang [2 ]
Xu, Tao [1 ]
机构
[1] Yunnan Univ, Coll Ecol & Environm Sci, Cuihu North Rd 5, Kunming 650091, Yunnan, Peoples R China
[2] Yunnan Acad Forestry & Grassland Sci, Kunming, Yunnan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
基金
中国国家自然科学基金;
关键词
Chloroplast genome; endemic species; Manglietia longirostrata; Magnoliaceae; MAGNOLIACEAE;
D O I
10.1080/23802359.2020.1791758
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Manglietia longirostrataSima is a rare and endemic species in China. The complete chloroplast genome (cpDNA) ofM. longirostratawas sequenced and assembled in this study. The cpDNA is 160,049 bps in length, contains a large single-copy region (LSC) of 88,098 bp and a small single-copy region (SSC) of 18,861 bp, separated by a pair of identical inverted repeat (IR) regions of 26,571 bp, each. The genome contains 123 genes, including 73 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Phylogenetic analysis of cp genome ofM. longirostratawith 11 chloroplast genomes previously reported in the Magnoliaceae shows thatM. longirostratais close toManglietia megaphyllawith high bootstrap value.
引用
收藏
页码:2890 / 2891
页数:2
相关论文
共 11 条
[1]   Toward almost closed genomes with GapFiller [J].
Boetzer, Marten ;
Pirovano, Walter .
GENOME BIOLOGY, 2012, 13 (06)
[2]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[3]   OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes [J].
Greiner, Stephan ;
Lehwark, Pascal ;
Bock, Ralph .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W59-W64
[4]   Magnolia hookeri var. longirostrata (Magnoliaceae), a new taxon from Yunnan, China [J].
Hu, Xiao-Min ;
Zeng, Qing-Wen ;
Fu, Lin .
ANNALES BOTANICI FENNICI, 2012, 49 (5-6) :417-421
[5]   MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms [J].
Kumar, Sudhir ;
Stecher, Glen ;
Li, Michael ;
Knyaz, Christina ;
Tamura, Koichiro .
MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (06) :1547-1549
[6]   The complete chloroplast genome sequence of Magnolia delavayi (Magnoliaceae), a rare ornamental and medical tree endemic to China [J].
Liang, Ao ;
Luo, Wei ;
Li, Zhuoran ;
Sima, Yongkang ;
Xu, Tao .
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01) :883-884
[7]   The EMBL-EBI search and sequence analysis tools APIs in 2019 [J].
Madeira, Fabio ;
Park, Young Mi ;
Lee, Joon ;
Buso, Nicola ;
Gur, Tamer ;
Madhusoodanan, Nandana ;
Basutkar, Prasad ;
Tivey, Adrian R. N. ;
Potter, Simon C. ;
Finn, Robert D. ;
Lopez, Rodrigo .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W636-W641
[8]   Prokka: rapid prokaryotic genome annotation [J].
Seemann, Torsten .
BIOINFORMATICS, 2014, 30 (14) :2068-2069
[9]  
Sima Y-K, 2016, SEED PLANTS XILONG M, P108
[10]  
Sima YK., 2012, P 2 INT S FAM MAGN, P55