Draft genome sequence data of Vibrio harveyi VH1 isolated from a diseased tiger grouper, Epinephelus fuscoguttatus, cultured in Malaysia

被引：2

作者：

Amatul-Samahah, Md. Ali ^{[1
,2
]}

Mohamad, Aslah ^{[3
]}

Al-Saari, Nurhidayu

Zamri-Saad, Mohd ^{[4
,5
]}

Azmai, Mohamad Noor Amal ^{[6
]}

Yusof, Mohd Termizi ^{[7
]}

Ina-Salwany, Md. Yasin ^{[1
,3
]}

Tanaka, Mami ^{[8
]}

Mino, Sayaka ^{[8
]}

Sawabe, Tomoo ^{[8
]}

机构：

[1] Univ Putra Malaysia, Dept Aquaculture, Fac Agr, Serdang 43400, Selangor, Malaysia

[2] Fisheries Res Inst Glami Lemi, Freshwater Fisheries Res Div, Jelebu 71650, Malaysia

[3] Univ Putra Malaysia, Inst Bioscience, Aquat Anim Hlth & Therapeut Lab, Serdang 43400, Selangor, Malaysia

[4] Int Islam Univ Malaysia IIUM, Int Inst Halal Res & Training, Jalan Gombak 53100, Selangor, Malaysia

[5] Univ Putra Malaysia, Dept Vet Lab Diag, Fac Vet Med, UPM Serdang 43400, Selangor, Malaysia

[6] Univ Putra Malaysia, Dept Biol, Fac Sci, UPM Serdang 43400, Selangor, Malaysia

[7] Univ Putra Malaysia, Fac Biotechnol & Biomol Sci, Dept Microbiol, UPM Serdang 43400, Selangor, Malaysia

[8] Hokkaido Univ, Fac Fisheries Sci, Microbiol Lab, 3-1-1 Minato cho, Hakodate, Hokkaido 0418611, Japan

来源：

DATA IN BRIEF | 2022年 / 44卷

关键词：

Aquaculture; Vibriosis; Grouper; Genome; Vibrio sp;

D O I：

10.1016/j.dib.2022.108533

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Vibriosis accounts for 66.7% of diseases reported in groupers' cultures and affects almost all stages of growth. The disease could lead up to mortality up to 50% mortality, and it was reported that high stocking density and poor fish handling were among the factors that contributed to the disease dissemination. V. harveyi has been reported to be among the causative agent and has caused acute mortality in cage groupers. In this study, we report the genome of V. harveyi VH1 isolated from a diseased tiger grouper Epinephelus fuscoguttatus, reared in a cage farm located in the coastal area of Langkawi. (c) 2022 The Author(s). Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/)

引用

页数：6

共 7 条

[1] Vibrio sp. associated with acute hepatopancreatic necrosis disease (AHPND) found in penaeid shrimp pond from east cost of peninsular Malaysia [J].

Amatul-Samahah, M. A. ;

Muthukrishnan, S. ;

Omar, W. H. H. W. ;

Ikhsan, N. F. M. ;

Ina-Salwany, M. Y. .

JOURNAL OF ENVIRONMENTAL BIOLOGY, 2020, 41 (05) :1160-1170

[2] Genome sequence of Vibrio parahaemolyticus C5A causing acute hepatopancreatic necrosis disease in shrimp isolated from a Malaysian shrimp culture pond [J].

Amatul-Samahah, Md Ali ;

Muthukrishnan, Sarmila ;

Al-saari, Nurhidayu ;

Ikhsan, Natrah Fatin Mohd ;

Zamri-Saad, Mohd ;

Azmai, Mohamad Noor Amal ;

Yusof, Mohd Termizi ;

Yasin, Ina-Salwany Md ;

Tanaka, Mami ;

Mino, Sayaka ;

Sawabe, Tomoo .

GENE REPORTS, 2022, 27

[3] RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes [J].

Brettin, Thomas ;

Davis, James J. ;

Disz, Terry ;

Edwards, Robert A. ;

Gerdes, Svetlana ;

Olsen, Gary J. ;

Olson, Robert ;

Overbeek, Ross ;

Parrello, Bruce ;

Pusch, Gordon D. ;

Shukla, Maulik ;

Thomason, James A., III ;

Stevens, Rick ;

Vonstein, Veronika ;

Wattam, Alice R. ;

Xia, Fangfang .

SCIENTIFIC REPORTS, 2015, 5

[4] Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation [J].

Koren, Sergey ;

Walenz, Brian P. ;

Berlin, Konstantin ;

Miller, Jason R. ;

Bergman, Nicholas H. ;

Phillippy, Adam M. .

GENOME RESEARCH, 2017, 27 (05) :722-736

[5] The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) [J].

Overbeek, Ross ;

Olson, Robert ;

Pusch, Gordon D. ;

Olsen, Gary J. ;

Davis, James J. ;

Disz, Terry ;

Edwards, Robert A. ;

Gerdes, Svetlana ;

Parrello, Bruce ;

Shukla, Maulik ;

Vonstein, Veronika ;

Wattam, Alice R. ;

Xia, Fangfang ;

Stevens, Rick .

NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D206-D214

[6] Availability of Nanopore sequences in the genome taxonomy for Vibrionaceae systematics: Rumoiensis Glade species as a test case [J].

Tanaka, Mami ;

Mino, Sayaka ;

Ogura, Yoshitoshi ;

Hayashi, Tetsuya ;

Sawabe, Tomoo .

PEERJ, 2018, 6

[7] Completing bacterial genome assemblies with multiplex MinION sequencing [J].

Wick, Ryan R. ;

Judd, Louise M. ;

Gorrie, Claire L. ;

Holt, Kathryn E. .

MICROBIAL GENOMICS, 2017, 3 (10)

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