Aberrant spliceosome expression and altered alternative splicing events correlate with maturation deficiency in human oocytes

被引:21
作者
Li, Junsheng [1 ,2 ,3 ]
Lu, Minzhen [1 ,2 ,3 ]
Zhang, Puyao [1 ,2 ,3 ]
Hou, Entai [1 ,2 ,3 ]
Li, Tianjie [1 ,2 ,3 ]
Liu, Xian [4 ]
Xu, Xiaofei [1 ,2 ,3 ]
Wang, Zhaohui [4 ]
Fan, Yong [5 ]
Zhen, Xiumei [1 ,2 ,3 ]
Li, Rong [1 ,2 ,3 ]
Liu, Ping [1 ,2 ,3 ]
Yu, Yang [1 ,2 ,3 ]
Hang, Jing [1 ,2 ,3 ]
Qiao, Jie [1 ,2 ,3 ,6 ]
机构
[1] Peking Univ Third Hosp, Dept Obstet & Gynecol, Ctr Reprod Med, Beijing, Peoples R China
[2] Minist Educ, Key Lab Assisted Reprod, Beijing, Peoples R China
[3] Beijing Key Lab Reprod Endocrinol & Assisted Repr, Beijing, Peoples R China
[4] Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Mol Dev Biol, Beijing, Peoples R China
[5] Guangzhou Med Univ, Key Lab Major Obstet Dis Guangdong Prov, Affiliated Hosp 3, Guangzhou, Peoples R China
[6] Peking Univ, Peking Tsinghua Ctr Life Sci, Beijing, Peoples R China
基金
中国国家自然科学基金;
关键词
Oocyte maturation deficiency; transcriptome; spliceosome; RNA; MUTATIONS; TRANSCRIPTOME; STIMULATION; PROTEINS; SEQUENCE; PATHWAY; EMBRYOS; IVF;
D O I
10.1080/15384101.2020.1799295
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Different strategies of ovarian stimulation are widely used in IVF to retrieve mature metaphase II (MII) oocytes for fertilization. On average, approximately 70% of recovered oocytes are mature, while personalized administration of hCG and/or GnRH agonist trigger andin vitromaturation (IVM) management can further improve the maturation rate. However, even under such conditions, a complete absence of oocyte maturation is still observed sporadically. The probable causes for such maturation-deficient (MD) oocytes - which arrest abnormally at metaphase I (MI) stage - are still under investigation. In the present study, using single-cell transcriptomic RNA sequencing (RNA-seq) and differential expression analysis, we showed that gene expression profiles were aberrant, and alternative splicing (AS) patterns were changed in MD oocytes when compared with normally mature (MN) oocytes. Gene ontology (GO) enrichment demonstrated that the differently expressed genes (DEGs) were mostly correlated with pre-mRNA splicing, RNA transportation, RNA processing, and mRNA regulation. Subsequently, analysis of AS events revealed that genes with altered AS patterns were primarily associated with metabolism and cell cycle. With these findings, we have demonstrated aberrant gene expression in complete maturation-deficient oocytes, and we propose that alterations in post-transcriptional regulation constitute a potential underlying mechanism governing oocyte maturation.
引用
收藏
页码:2182 / 2194
页数:13
相关论文
共 49 条
[1]   THE ROLE OF SPECIFIC PROTEIN-RNA AND PROTEIN-PROTEIN INTERACTIONS IN POSITIVE AND NEGATIVE CONTROL OF PRE-MESSENGER-RNA SPLICING BY TRANSFORMER-2 [J].
AMREIN, H ;
HEDLEY, ML ;
MANIATIS, T .
CELL, 1994, 76 (04) :735-746
[2]   Isolation of an active step I spliceosome and composition of its RNP core [J].
Bessonov, Sergey ;
Anokhina, Maria ;
Will, Cindy L. ;
Urlaub, Henning ;
Luehrmann, Reinhard .
NATURE, 2008, 452 (7189) :846-U3
[3]   The Relationship between Alternative Splicing and Proteomic Complexity [J].
Blencowe, Benjamin J. .
TRENDS IN BIOCHEMICAL SCIENCES, 2017, 42 (06) :407-408
[4]   Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA [J].
Bourgeois, CF ;
Lejeune, F ;
Stévenin, J .
PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 78, 2004, 78 :37-88
[5]   Dynamic Integration of Splicing within Gene Regulatory Pathways [J].
Braunschweig, Ulrich ;
Gueroussov, Serge ;
Plocik, Alex M. ;
Graveley, Brenton R. ;
Blencowe, Benjamin J. .
CELL, 2013, 152 (06) :1252-1269
[6]   Alternative splicing:: multiple control mechanisms and involvement in human disease [J].
Cáceres, JF ;
Kornblihtt, AR .
TRENDS IN GENETICS, 2002, 18 (04) :186-193
[7]   The Fanconi anaemia pathway: newyplayers and new functions [J].
Ceccaldi, Raphael ;
Sarangi, Prabha ;
D'Andrea, Alan D. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2016, 17 (06) :337-349
[8]   Oocyte-somatic cell interactions in the human ovary-novel role of bone morphogenetic proteins and growth differentiation factors [J].
Chang, Hsun-Ming ;
Qiao, Jie ;
Leung, Peter C. K. .
HUMAN REPRODUCTION UPDATE, 2017, 23 (01) :1-18
[9]   Biallelic Mutations in PATL2 Cause Female Infertility Characterized by Oocyte Maturation Arrest [J].
Chen, Biaobang ;
Zhang, Zhihua ;
Sun, Xiaoxi ;
Kuang, Yanping ;
Mao, Xiaoyan ;
Wang, Xueqian ;
Yan, Zheng ;
Li, Bin ;
Xu, Yao ;
Yu, Min ;
Fu, Jing ;
Mu, Jian ;
Zhou, Zhou ;
Li, Qiaoli ;
Jin, Li ;
He, Lin ;
Sang, Qing ;
Wang, Lei .
AMERICAN JOURNAL OF HUMAN GENETICS, 2017, 101 (04) :609-615
[10]  
Clarke Hugh J, 2012, Results Probl Cell Differ, V55, P1, DOI 10.1007/978-3-642-30406-4_1