Optical Tweezers Approaches for Probing Multiscale Protein Mechanics and Assembly

被引:16
作者
Lehmann, Kathrin [1 ,2 ]
Shayegan, Marjan [3 ]
Blab, Gerhard A. [2 ]
Forde, Nancy R. [1 ,4 ,5 ,6 ]
机构
[1] Simon Fraser Univ, Dept Phys, Burnaby, BC, Canada
[2] Univ Utrecht, Soft Condensed Matter & Biophys, Utrecht, Netherlands
[3] Harvard Univ, Sch Engn & Appl Sci, Cambridge, MA 02138 USA
[4] Simon Fraser Univ, Dept Mol Biol & Biochem, Burnaby, BC, Canada
[5] Simon Fraser Univ, Dept Chem, Burnaby, BC, Canada
[6] Simon Fraser Univ, Ctr Cell Biol Dev & Dis C2D2, Burnaby, BC, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
optical tweezers (OT); protein mechanics; single molecule; microrheology; collagen; protein structure; folding; protein assemblies; fibrillar proteins; I COLLAGEN; CONFORMATIONAL DYNAMICS; ACTIVE MICRORHEOLOGY; TORSIONAL RIGIDITY; FORCE; DNA; NETWORKS; FIBRIN; MICROTUBULES; ELASTICITY;
D O I
10.3389/fmolb.2020.577314
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Multi-step assembly of individual protein building blocks is key to the formation of essential higher-order structures inside and outside of cells. Optical tweezers is a technique well suited to investigate the mechanics and dynamics of these structures at a variety of size scales. In this mini-review, we highlight experiments that have used optical tweezers to investigate protein assembly and mechanics, with a focus on the extracellular matrix protein collagen. These examples demonstrate how optical tweezers can be used to study mechanics across length scales, ranging from the single-molecule level to fibrils to protein networks. We discuss challenges in experimental design and interpretation, opportunities for integration with other experimental modalities, and applications of optical tweezers to current questions in protein mechanics and assembly.
引用
收藏
页数:10
相关论文
共 127 条
[91]   Probing the structural dynamics of proteins and nucleic acids with optical tweezers [J].
Ritchie, Dustin B. ;
Woodside, Michael T. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2015, 34 :43-51
[92]   Optical Tweezers Microrheology: From the Basics to Advanced Techniques and Applications [J].
Robertson-Anderson, Rae M. .
ACS MACRO LETTERS, 2018, 7 (08) :968-975
[93]   Mechanisms of Motor-Independent Membrane Remodeling Driven by Dynamic Microtubules [J].
Rodriguez-Garcia, Ruddi ;
Volkov, Vladimir A. ;
Chen, Chiung-Yi ;
Katrukha, Eugene A. ;
Olieric, Natacha ;
Aher, Amol ;
Grigoriev, Ilya ;
Lopez, Magdalena Preciado ;
Steinmetz, Michel O. ;
Kapitein, Lukas C. ;
Koenderink, Gijsje ;
Dogterom, Marileen ;
Akhmanova, Anna .
CURRENT BIOLOGY, 2020, 30 (06) :972-+
[94]   Kinetics and non-exponential binding of DNA-coated colloids [J].
Rogers, W. Benjamin ;
Sinno, Talid ;
Crocker, John C. .
SOFT MATTER, 2013, 9 (28) :6412-6417
[95]   Adaptive Response of Actin Bundles under Mechanical Stress [J].
Ruckerl, Florian ;
Lenz, Martin ;
Betz, Timo ;
Manzi, John ;
Martiel, Jean-Louis ;
Safouane, Mahassine ;
Paterski-Boujemaa, Rajaa ;
Blanchoin, Laurent ;
Sykes, Cecile .
BIOPHYSICAL JOURNAL, 2017, 113 (05) :1072-1079
[96]   Tuning intermediate filament mechanics by variation of pH and ion charges [J].
Schepers, Anna, V ;
Lorenz, Charlotta ;
Koester, Sarah .
NANOSCALE, 2020, 12 (28) :15236-15245
[97]   Semiflexible Biopolymers in Bundled Arrangements [J].
Schnauss, Joerg ;
Haendler, Tina ;
Kaes, Josef A. .
POLYMERS, 2016, 8 (08)
[98]   Transition from a Linear to a Harmonic Potential in Collective Dynamics of a Multifilament Actin Bundle [J].
Schnauss, Joerg ;
Golde, Tom ;
Schuldt, Carsten ;
Schmidt, B. U. Sebastian ;
Glaser, Martin ;
Strehle, Dan ;
Haendler, Tina ;
Heussinger, Claus ;
Kaes, Josef A. .
PHYSICAL REVIEW LETTERS, 2016, 116 (10)
[99]   Elasticity of short DNA molecules:: Theory and experiment for contour lengths of 0.6-7 μm [J].
Seol, Yeonee ;
Li, Jinyu ;
Nelson, Philip C. ;
Perkins, Thomas T. ;
Betterton, M. D. .
BIOPHYSICAL JOURNAL, 2007, 93 (12) :4360-4373
[100]   Probing Inhomogeneous Diffusion in the Microenvironments of Phase-Separated Polymers under Confinement [J].
Shayegan, Marjan ;
Tahvildari, Radin ;
Metera, Kimberly ;
Kisley, Lydia ;
Michnick, Stephen W. ;
Leslie, Sabrina R. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2019, 141 (19) :7751-7757