A Prognostic Ferroptosis-Related lncRNA Model Associated With Immune Infiltration in Colon Cancer

被引:2
作者
Lu, Jianzhong [1 ]
Tan, Jinhua [1 ]
Yu, Xiaoqing [1 ]
机构
[1] Shanghai Inst Technol, Sch Sci, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
colon cancer; ferroptosis; long non-coding RNA; prognostic model; immune microenvironment; LONG NONCODING RNAS; COLORECTAL-CANCER; SIGNATURE; METABOLISM; EXPRESSION; MICROENVIRONMENT; SNHG15; FORM;
D O I
10.3389/fgene.2022.934196
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Colon cancer (CC) is a common malignant tumor worldwide, and ferroptosis plays a vital role in the pathology and progression of CC. Effective prognostic tools are required to guide clinical decision-making in CC. In our study, gene expression and clinical data of CC were downloaded from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. We identified the differentially expressed ferroptosis-related lncRNAs using the differential expression and gene co-expression analysis. Then, univariate and multivariate Cox regression analyses were used to identify the effective ferroptosis-related lncRNAs for constructing the prognostic model for CC. Gene set enrichment analysis (GSEA) was conducted to explore the functional enrichment analysis. CIBERSORT and single-sample GSEA were performed to investigate the association between our model and the immune microenvironment. Finally, three ferroptosis-related lncRNAs (XXbac-B476C20.9, TP73-AS1, and SNHG15) were identified to construct the prognostic model. The results of the validation showed that our model was effective in predicting the prognosis of CC patients, which also was an independent prognostic factor for CC. The GSEA analysis showed that several ferroptosis-related pathways were significantly enriched in the low-risk group. Immune infiltration analysis suggested that the level of immune cell infiltration was significantly higher in the high-risk group than that in the low-risk group. In summary, we established a prognostic model based on the ferroptosis-related lncRNAs, which could provide clinical guidance for future laboratory and clinical research on CC.
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页数:15
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共 56 条
  • [1] Decoding LncRNAs
    Borkiewicz, Lidia
    Kalafut, Joanna
    Dudziak, Karolina
    Przybyszewska-Podstawka, Alicja
    Telejko, Ilona
    [J]. CANCERS, 2021, 13 (11)
  • [2] Development and validation of a ferroptosis-related lncRNAs prognosis signature in colon cancer
    Cai, Hua-Jun
    Zhuang, Zhi-Cheng
    Wu, Yong
    Zhang, Yi-Yi
    Liu, Xing
    Zhuang, Jin-Fu
    Yang, Yuan-Feng
    Gao, Yuan
    Chen, Bin
    Guan, Guo-Xian
    [J]. BOSNIAN JOURNAL OF BASIC MEDICAL SCIENCES, 2021, 21 (05) : 569 - 576
  • [3] Long non-coding RNA TP73-AS1 sponges miR-194 to promote colorectal cancer cell proliferation, migration and invasion via up-regulating TGFα
    Cai, Yu
    Yan, Pu
    Zhang, Ge
    Yang, Wenqi
    Wang, Haiping
    Cheng, Xiaohu
    [J]. CANCER BIOMARKERS, 2018, 23 (01) : 145 - 156
  • [4] The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Colon Adenocarcinoma Metastasis
    Chang, Zhengyan
    Huang, Runzhi
    Fu, Wanting
    Li, Jiehan
    Ji, Guo
    Huang, Jinglei
    Shi, Weijun
    Yin, Huabin
    Wang, Weifeng
    Meng, Tong
    Huang, Zongqiang
    Wei, Qing
    Qin, Huanlong
    [J]. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2020, 8
  • [5] Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade
    Charoentong, Pornpimol
    Finotello, Francesca
    Angelova, Mihaela
    Mayer, Clemens
    Efremova, Mirjana
    Rieder, Dietmar
    Hackl, Hubert
    Trajanoski, Zlatko
    [J]. CELL REPORTS, 2017, 18 (01): : 248 - 262
  • [6] Targeted UPLC-MS Metabolic Analysis of Human Faeces Reveals Novel Low-Invasive Candidate Markers for Colorectal Cancer
    Cubiella, Joaquin
    Clos-Garcia, Marc
    Alonso, Cristina
    Martinez-Arranz, Ibon
    Perez-Cormenzana, Miriam
    Barrenetxea, Ziortza
    Berganza, Jesus
    Rodriguez-Llopis, Isabel
    D'Amato, Mauro
    Bujanda, Luis
    Diaz-Ondina, Marta
    Falcon-Perez, Juan M.
    [J]. CANCERS, 2018, 10 (09)
  • [7] Ferroptosis: An Iron-Dependent Form of Nonapoptotic Cell Death
    Dixon, Scott J.
    Lemberg, Kathryn M.
    Lamprecht, Michael R.
    Skouta, Rachid
    Zaitsev, Eleina M.
    Gleason, Caroline E.
    Patel, Darpan N.
    Bauer, Andras J.
    Cantley, Alexandra M.
    Yang, Wan Seok
    Morrison, Barclay, III
    Stockwell, Brent R.
    [J]. CELL, 2012, 149 (05) : 1060 - 1072
  • [8] Alginate/κ-carrageenan oral microcapsules loaded with Agaricus bisporus polysaccharides MH751906 for natural killer cells mediated colon cancer immunotherapy
    El-Deeb, Nehal M.
    Ibrahim, Omar M.
    Mohamed, Mahmoud A.
    Farag, Mohamed M. S.
    Farrag, Ayman A.
    El-Aassar, M. R.
    [J]. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2022, 205 : 385 - 395
  • [9] Integrated clinical characteristics and omics analysis identifies a ferroptosis and iron-metabolism-related lncRNA signature for predicting prognosis and therapeutic responses in ovarian cancer
    Feng, Songwei
    Yin, Han
    Zhang, Ke
    Shan, Mei
    Ji, Xuan
    Luo, Shanhui
    Shen, Yang
    [J]. JOURNAL OF OVARIAN RESEARCH, 2022, 15 (01)
  • [10] FSTL1 interacts with VIM and promotes colorectal cancer metastasis via activating the focal adhesion signalling pathway
    Gu, Chuansha
    Wang, Xiaoyan
    Long, Ting
    Wang, Xia
    Zhong, Yan
    Ma, Yidan
    Hu, Zhiyan
    Li, Zuguo
    [J]. CELL DEATH & DISEASE, 2018, 9