Rationalizing Secondary Pharmacology Screening Using Human Genetic and Pharmacological Evidence

被引:21
作者
Deaton, Aimee M. [1 ]
Fan, Fan [1 ]
Zhang, Wei [1 ]
Nguyen, Phuong A. [1 ]
Ward, Lucas D. [1 ]
Nioi, Paul [1 ]
机构
[1] Amgen Inc, Comparat Biol & Safety Sci, Cambridge, MA 02142 USA
关键词
drug safety; secondary pharmacology screening; off-targets; genetics; CATHEPSIN-D DEFICIENCY; OF-FUNCTION MUTATIONS; CARDIAC-ARRHYTHMIA; DRUG DISCOVERY; CHANNEL GENE; RECEPTOR; ATTRITION; TARGETS; TRPM4; NONCOMPACTION;
D O I
10.1093/toxsci/kfy265
中图分类号
R99 [毒物学(毒理学)];
学科分类号
100405 ;
摘要
Safety-related drug failures remain a major challenge for the pharmaceutical industry. One approach to ensuring drug safety involves assessing small molecule drug specificity by examining the ability of a drug candidate to interact with a panel of off-target proteins, referred to as secondary pharmacology screening. Information from human genetics and pharmacology can be used to select proteins associated with adverse effects for such screening. In an analysis of marketed drugs, we found a clear relationship between the genetic and pharmacological phenotypes of a drug's off-target proteins and the observed drug side effects. In addition to using this phenotypic information for the selection of secondary pharmacology screens, we also show that it can be used to help identify drug off-target protein interactions responsible for drug-related adverse events. We anticipate that this phenotype-driven approach to secondary pharmacology screening will help to reduce safety-related drug failures due to drug off-target protein interactions.
引用
收藏
页码:593 / 603
页数:11
相关论文
共 68 条
[1]   Mutations in PCSK9 cause autosomal dominant hypercholesterolemia [J].
Abifadel, M ;
Varret, M ;
Rabès, JP ;
Allard, D ;
Ouguerram, K ;
Devillers, M ;
Cruaud, C ;
Benjannet, S ;
Wickham, L ;
Erlich, D ;
Derré, A ;
Villéger, L ;
Farnier, M ;
Beucler, I ;
Bruckert, E ;
Chambaz, J ;
Chanu, B ;
Lecerf, JM ;
Luc, G ;
Moulin, P ;
Weissenbach, J ;
Prat, A ;
Krempf, M ;
Junien, C ;
Seidah, NG ;
Boileau, C .
NATURE GENETICS, 2003, 34 (02) :154-156
[2]  
Agresti A., 2002, Categorical data analysis
[3]   De novo gain-of-function KCNT1 channel mutations cause malignant migrating partial seizures of infancy [J].
Barcia, Giulia ;
Fleming, Matthew R. ;
Deligniere, Aline ;
Gazula, Valeswara-Rao ;
Brown, Maile R. ;
Langouet, Maeva ;
Chen, Haijun ;
Kronengold, Jack ;
Abhyankar, Avinash ;
Cilio, Roberta ;
Nitschke, Patrick ;
Kaminska, Anna ;
Boddaert, Nathalie ;
Casanova, Jean-Laurent ;
Desguerre, Isabelle ;
Munnich, Arnold ;
Dulac, Olivier ;
Kaczmarek, Leonard K. ;
Colleaux, Laurence ;
Nabbout, Rima .
NATURE GENETICS, 2012, 44 (11) :1255-1259
[4]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[5]   The ChEMBL bioactivity database: an update [J].
Bento, A. Patricia ;
Gaulton, Anna ;
Hersey, Anne ;
Bellis, Louisa J. ;
Chambers, Jon ;
Davies, Mark ;
Krueger, Felix A. ;
Light, Yvonne ;
Mak, Lora ;
McGlinchey, Shaun ;
Nowotka, Michal ;
Papadatos, George ;
Santos, Rita ;
Overington, John P. .
NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D1083-D1090
[6]   MULTIPLE SIGNIFICANCE TESTS - THE BONFERRONI METHOD .10. [J].
BLAND, JM ;
ALTMAN, DG .
BRITISH MEDICAL JOURNAL, 1995, 310 (6973) :170-170
[7]  
Boeynaems Jean-Marie, 2005, Curr Opin Investig Drugs, V6, P275
[8]   Reducing safety-related drug attrition: the use of in vitro pharmacological profiling [J].
Bowes, Joanne ;
Brown, Andrew J. ;
Hamon, Jacques ;
Jarolimek, Wolfgang ;
Sridhar, Arun ;
Waldron, Gareth ;
Whitebread, Steven .
NATURE REVIEWS DRUG DISCOVERY, 2012, 11 (12) :909-922
[9]   Molecular bases of defective signal transduction in the platelet P2Y12 receptor of a patient with congenital bleeding [J].
Cattaneo, M ;
Zighetti, ML ;
Lombardi, R ;
Martinez, C ;
Lecchi, A ;
Conley, PB ;
Ware, J ;
Ruggeri, ZM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (04) :1978-1983
[10]   Probing Ligand Binding to Thromboxane Synthase [J].
Chao, Wei-Chih ;
Lu, Jyh-Feng ;
Wang, Jinn-Shyan ;
Yang, Hsiao-Ching ;
Pan, Tai-An ;
Chou, Steven Chun-Wei ;
Wang, Lee-Ho ;
Chou, Pi-Tai .
BIOCHEMISTRY, 2013, 52 (06) :1113-1121