NONNEGATIVE MATRIX FACTORIZATION BASED ON ALTERNATING NONNEGATIVITY CONSTRAINED LEAST SQUARES AND ACTIVE SET METHOD

被引:384
作者
Kim, Hyunsoo [1 ]
Park, Haesun [1 ]
机构
[1] Georgia Inst Technol, Coll Comp, Atlanta, GA 30332 USA
关键词
nonnegative matrix factorization; lower rank approximation; two-block coordinate descent method; Karush-Kuhn-Tucker (KKT) conditions; nonnegativity constrained least squares; active set method;
D O I
10.1137/07069239X
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
Nonnegative matrix factorization (NMF) determines a lower rank approximation of a matrix A is an element of R-mxn approximate to WH where an integer k << min(m, n) is given and nonnegativity is imposed on all components of the factors W is an element of R-mxk and H is an element of R-kxn. NMF has attracted much attention for over a decade and has been successfully applied to numerous data analysis problems. In applications where the components of the data are necessarily nonnegative, such as chemical concentrations in experimental results or pixels in digital images, NMF provides a more relevant interpretation of the results since it gives nonsubtractive combinations of nonnegative basis vectors. In this paper, we introduce an algorithm for NMF based on alternating nonnegativity constrained least squares (NMF/ANLS) and the active set-based fast algorithm for nonnegativity constrained least squares with multiple right-hand side vectors, and we discuss its convergence properties and a rigorous convergence criterion based on the Karush-Kuhn-Tucker (KKT) conditions. In addition, we also describe algorithms for sparse NMFs and regularized NMF. We show how we impose a sparsity constraint on one of the factors by L-1-norm minimization and discuss its convergence properties. Our algorithms are compared to other commonly used NMF algorithms in the literature on several test data sets in terms of their convergence behavior.
引用
收藏
页码:713 / 730
页数:18
相关论文
共 38 条
[1]  
[Anonymous], 2005, ACCELERATING LEE SEU
[2]   Algorithms and applications for approximate nonnegative matrix factorization [J].
Berry, Michael W. ;
Browne, Murray ;
Langville, Amy N. ;
Pauca, V. Paul ;
Plemmons, Robert J. .
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 2007, 52 (01) :155-173
[3]  
Bertsekas D., 1999, NONLINEAR PROGRAMMIN
[4]  
Bro R, 1997, J CHEMOMETR, V11, P393, DOI 10.1002/(SICI)1099-128X(199709/10)11:5<393::AID-CEM483>3.3.CO
[5]  
2-C
[6]   Metagenes and molecular pattern discovery using matrix factorization [J].
Brunet, JP ;
Tamayo, P ;
Golub, TR ;
Mesirov, JP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (12) :4164-4169
[7]  
Chu MT., 2004, OPTIMALITY COMPUTATI
[8]  
Ding C., 2006, P 12 ACM SIGKDD INT, P126, DOI [DOI 10.1145/1150402.1150420, 10.1145/1150402.1150420]
[9]   Multi-way clustering of microarray data using probabilistic sparse matrix factorization [J].
Dueck, D ;
Morris, QD ;
Frey, BJ .
BIOINFORMATICS, 2005, 21 :I144-I151
[10]   Improving molecular cancer class discovery through sparse non-negative matrix factorization [J].
Gao, Y ;
Church, G .
BIOINFORMATICS, 2005, 21 (21) :3970-3975