Identification of ZBTB9 as a potential therapeutic target against dysregulation of tumor cells proliferation and a novel biomarker in Liver Hepatocellular Carcinoma

被引:8
作者
Zhang, Zhenshan [1 ,2 ,3 ]
Wu, Leilei [1 ]
Li, Juan [2 ]
Chen, Jiayan [2 ]
Yu, Qi [1 ,4 ]
Yao, Hui [5 ]
Xu, Yaping [1 ]
Liu, Liang [1 ,2 ,5 ]
机构
[1] Tongji Univ, Shanghai Pulm Hosp, Sch Med, Dept Radiat Oncol, Shanghai, Peoples R China
[2] Fudan Univ, Shanghai Canc Ctr, Dept Radiat Oncol, Shanghai 200032, Peoples R China
[3] Fudan Univ, Canc Hosp, Shanghai Proton & Heavy Ion Ctr, Dept Radiat Oncol, Shanghai, Peoples R China
[4] Shanghai Concord Canc Ctr, Shanghai 200240, Peoples R China
[5] Shanghai Int Med Ctr, Dept Radiat Oncol, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
LIHC; ZBTB9; TCGA; Prognosis; Biomarker; CANCER; EXPRESSION; TRANSCRIPTION; MUTATIONS; RESOURCE;
D O I
10.1186/s12967-022-03790-0
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Background: Zinc finger and bric-a-brac/tramtrack/broad (ZBTB) domain-containing proteins have been reported to be associated with many tumors' development. However, in tumor initiation and progression, the role of ZBTB9, one of the protein family, and its prognostic value were yet to be elucidated in Liver Hepatocellular Carcinoma (LIHC). Methods: We used R software and online bioinformatics analysis tools such as GEPIA2, cBioPortal, TIMER2, Metascape, UALCAN, STRING, TISIDB, and COSMIC to investigate ZBTB9's characteristics and function in LIHC, including abnormal expression, carcinogenic role, related signaling pathways and prognostic value. Furthermore, cell experiments (such as formation, wound healing, and transwell assays) and analyses based on clinical samples (such as immunohistochemistry (IHC) and promoter methylation analysis) were conducted to verify pivotal conclusions. Results: ZBTB9 was overexpressed in LIHC samples compared to adjacent normal tissues. Through the analysis of genomic alteration and promoter hypomethylation, the clinical value and etiology of abnormal expression of ZBTB9 were preliminarily exlpored. Subsequent evidence showed that it could result in tumor progression and poor prognosis via activating cell cycle, DNA repair, MYC, and KRAS-associated signaling pathways as well as rendering immune dysregulation. After the knockdown of ZBTB9, evidently inhibited capacities of tumor cells proliferation and migration were observed. These results together indicated that ZBTB9 could be a promising prognostic biomarker and had the potential value to offer novel therapeutic targets for LIHC treatment. Conclusions: ZBTB9 was identified as a novel biomarker to predict the prognosis and tumor progression in LIHC, and a promising therapeutic target to invert tumor development.
引用
收藏
页数:23
相关论文
共 42 条
  • [1] Expressional variations of Kaiso: an association with pathological characteristics and field cancerization of OSCC
    Ahmed, Shaheen
    Khan, Saeed
    Qureshi, Muhammad Asif
    Bukhari, Uzma
    Anis, Mehak
    Mughal, Muhammad Nouman
    [J]. BMC CANCER, 2022, 22 (01)
  • [2] The role of exosomes in the molecular mechanisms of metastasis: Focusing on EMT and cancer stem cells
    Babaei, Ghader
    Vostakolaei, Mehdi Asghari
    Bazl, Masoumeh Rajabi
    Aziz, Shiva Gholizadeh-Ghaleh
    Gholipour, Elham
    Nejati-Koshki, Kazem
    [J]. LIFE SCIENCES, 2022, 310
  • [3] The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
    Cerami, Ethan
    Gao, Jianjiong
    Dogrusoz, Ugur
    Gross, Benjamin E.
    Sumer, Selcuk Onur
    Aksoy, Buelent Arman
    Jacobsen, Anders
    Byrne, Caitlin J.
    Heuer, Michael L.
    Larsson, Erik
    Antipin, Yevgeniy
    Reva, Boris
    Goldberg, Arthur P.
    Sander, Chris
    Schultz, Nikolaus
    [J]. CANCER DISCOVERY, 2012, 2 (05) : 401 - 404
  • [4] UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses
    Chandrashekar, Darshan S.
    Bashel, Bhuwan
    Balasubramanya, Sai Akshaya Hodigere
    Creighton, Chad J.
    Ponce-Rodriguez, Israel
    Chakravarthi, Balabhadrapatruni V. S. K.
    Varambally, Sooryanarayana
    [J]. NEOPLASIA, 2017, 19 (08): : 649 - 658
  • [5] DNA methylation-based classification of sinonasal undifferentiated carcinoma
    Dogan, Snjezana
    Vasudevaraja, Varshini
    Xu, Bin
    Serrano, Jonathan
    Ptashkin, Ryan N.
    Jung, Hun Jae
    Chiang, Sarah
    Jungbluth, Achim A.
    Cohen, Marc A.
    Ganly, Ian
    Berger, Michael F.
    Boroujeni, Amir Momeni
    Ghossein, Ronald A.
    Ladanyi, Marc
    Chute, Deborah J.
    Snuderl, Matija
    [J]. MODERN PATHOLOGY, 2019, 32 (10) : 1447 - 1459
  • [6] COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer
    Forbes, Simon A.
    Tang, Gurpreet
    Bindal, Nidhi
    Bamford, Sally
    Dawson, Elisabeth
    Cole, Charlotte
    Kok, Chai Yin
    Jia, Mingming
    Ewing, Rebecca
    Menzies, Andrew
    Teague, Jon W.
    Stratton, Michael R.
    Futreal, P. Andrew
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 : D652 - D657
  • [7] Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
    Gao, Jianjiong
    Aksoy, Buelent Arman
    Dogrusoz, Ugur
    Dresdner, Gideon
    Gross, Benjamin
    Sumer, S. Onur
    Sun, Yichao
    Jacobsen, Anders
    Sinha, Rileen
    Larsson, Erik
    Cerami, Ethan
    Sander, Chris
    Schultz, Nikolaus
    [J]. SCIENCE SIGNALING, 2013, 6 (269) : pl1
  • [8] Visualizing and interpreting cancer genomics data via the Xena platform
    Goldman, Mary J.
    Craft, Brian
    Hastie, Mim
    Repecka, Kristupas
    McDade, Fran
    Kamath, Akhil
    Banerjee, Ayan
    Luo, Yunhai
    Rogers, Dave
    Brooks, Angela N.
    Zhu, Jingchun
    Haussler, David
    [J]. NATURE BIOTECHNOLOGY, 2020, 38 (06) : 675 - 678
  • [9] LINC00662 promotes hepatocellular carcinoma progression via altering genomic methylation profiles
    Guo, Tao
    Gong, Cheng
    Wu, Ping
    Battaglia-Hsu, Shyue-Fang
    Feng, Juan
    Liu, Pengpeng
    Wang, Haitao
    Guo, Deliang
    Yao, Ye
    Chen, Baiyang
    Xiao, Yusha
    Liu, Zhisu
    Li, Zhen
    [J]. CELL DEATH AND DIFFERENTIATION, 2020, 27 (07) : 2191 - 2205
  • [10] Spatially interacting phosphorylation sites and mutations in cancer
    Huang, Kuan-lin
    Scott, Adam D.
    Zhou, Daniel Cui
    Wang, Liang-Bo
    Weerasinghe, Amila
    Elmas, Abdulkadir
    Liu, Ruiyang
    Wu, Yige
    Wendl, Michael C.
    Wyczalkowski, Matthew A.
    Baral, Jessika
    Sengupta, Sohini
    Lai, Chin-Wen
    Ruggles, Kelly
    Payne, Samuel H.
    Raphael, Benjamin
    Fenyo, David
    Chen, Ken
    Mills, Gordon
    Ding, Li
    [J]. NATURE COMMUNICATIONS, 2021, 12 (01)