Water alignment, dipolar interactions, and multiple proton occupancy during water-wire proton transport

被引:16
作者
Chou, T [1 ]
机构
[1] Dept Biomath, Los Angeles, CA 90095 USA
[2] Inst Pure & Appl Math, Los Angeles, CA 90095 USA
基金
美国国家科学基金会;
关键词
D O I
10.1016/S0006-3495(04)74335-0
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
A discrete multistate kinetic model for water-wire proton transport is constructed and analyzed using Monte Carlo simulations. In the model, each water molecule can be in one of three states: oxygen lone-pairs pointing leftward, pointing rightward, or protonated (H3O+). Specific rules for transitions among these states are defined as protons hop across successive water oxygens. Our model also includes water-channel interactions that preferentially align the water dipoles, nearest-neighbor dipolar coupling interactions, and Coulombic repulsion. Extensive Monte Carlo simulations were performed and the observed qualitative physical behaviors discussed. We find the parameters that allow the model to exhibit superlinear and sublinear current-voltage relationships, and show why alignment fields, whether generated by interactions with the pore interior or by membrane potentials, always decrease the proton current. The simulations also reveal a "lubrication" mechanism that suppresses water dipole interactions when the channel is multiply occupied by protons. This effect can account for an observed sublinear-to-superlinear transition in the current-voltage relationship.
引用
收藏
页码:2827 / 2836
页数:10
相关论文
共 62 条
[1]   THE GROTTHUSS MECHANISM [J].
AGMON, N .
CHEMICAL PHYSICS LETTERS, 1995, 244 (5-6) :456-462
[2]   PROTON CONDUCTANCE BY THE GRAMICIDIN WATER WIRE - MODEL FOR PROTON CONDUCTANCE IN THE F1F0 ATPASES [J].
AKESON, M ;
DEAMER, DW .
BIOPHYSICAL JOURNAL, 1991, 60 (01) :101-109
[3]  
Alberts B., 1994, MOL BIOL CELL
[4]   APPLICATIONS OF QUANTUM-CLASSICAL AND QUANTUM STOCHASTIC MOLECULAR-DYNAMICS SIMULATIONS FOR PROTON-TRANSFER PROCESSES [J].
BALA, P ;
LESYNG, B ;
MCCAMMON, JA .
CHEMICAL PHYSICS, 1994, 180 (2-3) :271-285
[5]   Soliton model for proton conductivity in Langmuir films [J].
Bazeia, D ;
Leite, VBP ;
Lima, BHB ;
Moraes, F .
CHEMICAL PHYSICS LETTERS, 2001, 340 (3-4) :205-210
[6]   Energetics of ion conduction through the K+ channel [J].
Bernèche, S ;
Roux, B .
NATURE, 2001, 414 (6859) :73-77
[7]   The ATP synthase - A splendid molecular machine [J].
Boyer, PD .
ANNUAL REVIEW OF BIOCHEMISTRY, 1997, 66 :717-749
[8]   Noncontact dipole effects on channel permeation.: I.: Experiments with (5F-Indole)Trp13 gramicidin A channels [J].
Busath, DD ;
Thulin, CD ;
Hendershot, RW ;
Phillips, LR ;
Maughan, P ;
Cole, CD ;
Bingham, NC ;
Morrison, S ;
Baird, LC ;
Hendershot, RJ ;
Cotten, M ;
Cross, TA .
BIOPHYSICAL JOURNAL, 1998, 75 (06) :2830-2844
[9]   Thermodynamic view of activation energies of proton transfer in various gramicidin A channels [J].
Chernyshev, A ;
Cukierman, S .
BIOPHYSICAL JOURNAL, 2002, 82 (01) :182-192
[10]   Ribosome recycling, diffusion, and mRNA loop formation in translational regulation [J].
Chou, T .
BIOPHYSICAL JOURNAL, 2003, 85 (02) :755-773