Spirosoma terrae sp nov., Isolated from Soil from Jeju Island, Korea

被引:10
作者
Ten, Leonid N. [1 ]
Okiria, Joseph [1 ]
Lee, Jae-Jin [1 ]
Lee, Seung-Yeol [1 ]
Park, Sangkyu [1 ]
Lee, Dae Sung [2 ]
Kang, In-Kyu [3 ]
Kim, Myung Kyum [4 ]
Jung, Hee-Young [1 ,5 ]
机构
[1] Kyungpook Natl Univ, Sch Appl Biosci, Daegu 41566, South Korea
[2] Kyungpook Natl Univ, Dept Environm Engn, Daegu 41566, South Korea
[3] Kyungpook Natl Univ, Dept Hort Sci, Daegu 41566, South Korea
[4] Seoul Womens Univ, Dept Bio & Environm Technol, Seoul 01797, South Korea
[5] Kyungpook Natl Univ, Inst Plant Med, Daegu 41566, South Korea
基金
新加坡国家研究基金会;
关键词
PERFORMANCE LIQUID-CHROMATOGRAPHY; COMPLETE GENOME SEQUENCE; BACTERIAL SYSTEMATICS; EMENDED DESCRIPTION; GENUS SPIROSOMA; HAN RIVER; RESISTANT; GAMMA; TREES; WATER;
D O I
10.1007/s00284-017-1408-6
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The taxonomic position of bacterial strain, designated 15J9-4(T), recovered from a beach soil sample on Jeju Island, South Korea, was established using a polyphasic approach. Strain 15J9-4(T) was assigned to phylum Bacteroidetes within the family Cytophagaceae based on 16S rRNA gene similarities. The closest phylogenetic relatives with validly published names were Spirosoma panaciterrae Gsoil 1519(T) (94.2% similarity) and Spirosoma luteolum 16F6E(T) (94.1%). Cells were rod-shaped, Gram-stain-negative, and non-motile. The isolate grew on NA, R2A, TSA, and LB agar. The temperature limits for growth were 10 and 30 A degrees C with an optimum at 25 A degrees C and the pH range was 7-8. Menaquinone MK-7 was the predominant respiratory quinone. The major cellular fatty acids comprised summed feature 3 (C-16:1 omega 6c/C-16:1 omega 7c, 30.2%), C-16:1 omega 5c (22.2%), iso C-15:0 (12.9%), and C-16:0 (8.8%). Phosphatidylethanolamine was identified as the major polar lipid. The G+C content of the genomic DNA was 48.4 mol%. The results obtained from the polyphasic analyses allowed for the genotypic and phenotypic differentiation of strain 15J9-4(T) from recognized Spirosoma species. Therefore, the isolate is considered to represent a novel species in the genus Spirosoma, for which the name Spirosoma terrae sp. nov. is proposed. The type strain is 15J9-4(T) (= KCTC 52035(T) = JCM 31994(T)).
引用
收藏
页码:492 / 498
页数:7
相关论文
共 39 条
  • [1] Spirosoma oryzae sp nov., isolated from rice soil and emended description of the genus Spirosoma
    Ahn, Jae-Hyung
    Weon, Hang-Yeon
    Kim, Soo-Jin
    Hong, Seung-Beom
    Seok, Soon-Ja
    Kwon, Soon-Wo
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 : 3230 - 3234
  • [2] Spirosoma arcticum sp nov., isolated from high Arctic glacial till
    Chang, Xulu
    Jiang, Fan
    Wang, Tao
    Kan, Wenjing
    Qu, Zhihao
    Ren, Lvzhi
    Fang, Chengxiang
    Peng, Fang
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 : 2233 - 2237
  • [3] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
    FELSENSTEIN, J
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376
  • [4] Spirosoma spitsbergense sp nov and Spirosoma luteum sp nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma
    Finster, Kai Waldemar
    Herbert, Rodney Andrew
    Lomstein, Bente Aagaard
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2009, 59 : 839 - 844
  • [5] Spirosoma endophyticum sp nov., isolated from Zn- and Cd-accumulating Salix caprea
    Fries, Julia
    Pfeiffer, Stefan
    Kuffner, Melanie
    Sessitsch, Angela
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 : 4586 - 4590
  • [6] Hall T. A., NUCL ACIDS S SER, V41, P95, DOI DOI 10.1021/BK-1999-0734.CH008
  • [7] Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection
    Hiraishi, A
    Ueda, Y
    Ishihara, J
    Mori, T
    [J]. JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 1996, 42 (06) : 457 - 469
  • [8] Spirosoma swuense sp nov., isolated from wet soil
    Joo, Eun Sun
    Kim, Eun Bit
    Jeon, Seon Hwa
    Srinivasan, Sathiyaraj
    Kim, Myung Kyum
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (03) : 532 - 536
  • [9] Spirosoma aerolatum sp nov., isolated from a motor car air conditioning system
    Kim, Dong-Uk
    Lee, Hyosun
    Kim, Song-Gun
    Ahn, Jae-Hyung
    Park, So Yoon
    Ka, Jong-Ok
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 : 4003 - 4007
  • [10] KOMAGATA K, 1987, METHOD MICROBIOL, V19, P161