Branching out: what omics can tell us about primate evolution

被引:9
作者
Kuderna, Lukas F. K. [1 ]
Esteller-Cucala, Paula [1 ]
Marques-Bonet, Tomas [1 ,2 ,3 ,4 ]
机构
[1] PRBB, Inst Evolutionary Biol UPF CSIC, Dr Aiguader 88, Barcelona 08003, Spain
[2] Catalan Inst Res & Adv Studies ICREA, Passeig Lluis Companys 23, Barcelona 08010, Spain
[3] Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Baldiri & Reixac 4, Barcelona 08028, Spain
[4] Univ Autonoma Barcelona, Inst Catala Paleontol Miquel Crusafont, Edif ICTA ICP,C Columnes S-N, Barcelona 08193, Spain
基金
欧洲研究理事会;
关键词
GENOME; CHIMPANZEE; INSIGHTS; EXPRESSION; MACAQUES; REVEAL; IMPACT;
D O I
10.1016/j.gde.2020.06.006
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The study of primate comparative genomics has long been a focus of research, particularly in the context of understanding human evolutionary history. Recently, high-throughput methods have become accessible that allow us to tackle these questions at scale by comparing genomes within and between species, or looking at gene regulatory and expression changes between species and tissues. This burst in large-scale genomic studies has drastically increased the resolution at which we are now able to understand the evolutionary forces acting upon our own species. Furthermore, the drop in sequencing costs has made it possible to go beyond generating datasets that focus purely on human biology, and to begin incorporating larger genomic studies of non-human primates. Here, we give an overview of recent advances in large-scale high-throughput studies across the whole primate radiation.
引用
收藏
页码:65 / 71
页数:7
相关论文
共 68 条
  • [1] Insights in human epigenomic dynamics through comparative primate analysis
    Bell, Christopher G.
    [J]. GENOMICS, 2016, 108 (3-4) : 115 - 125
  • [2] A comparison of gene expression and DNA methylation patterns across tissues and species
    Blake, Lauren E.
    Roux, Julien
    Hernando-Herraez, Irene
    Banovich, Nicholas E.
    Perez, Raquel Garcia
    Hsiao, Chiaowen Joyce
    Eres, Ittai
    Cuevas, Claudia
    Marques-Bonet, Tomas
    Gilad, Yoav
    [J]. GENOME RESEARCH, 2020, 30 (02) : 250 - 262
  • [3] Gene Expression Differences Among Primates Are Associated With Changes in a Histone Epigenetic Modification
    Cain, Carolyn E.
    Blekhman, Ran
    Marioni, John C.
    Gilad, Yoav
    [J]. GENETICS, 2011, 187 (04) : 1225 - U418
  • [4] Gene expression across mammalian organ development
    Cardoso-Moreira, Margarida
    Halbert, Jean
    Valloton, Delphine
    Velten, Britta
    Chen, Chunyan
    Shao, Yi
    Liechti, Angelica
    Ascencao, Kelly
    Rummel, Coralie
    Ovchinnikova, Svetlana
    Mazin, Pavel V.
    Xenarios, Ioannis
    Harshman, Keith
    Mort, Matthew
    Cooper, David N.
    Sandi, Carmen
    Soares, Michael J.
    Ferreira, Paula G.
    Afonso, Sandra
    Carneiro, Miguel
    Turner, James M. A.
    VandeBerg, John L.
    Fallahshahroudi, Amir
    Jensen, Per
    Behr, Ruediger
    Lisgo, Steven
    Lindsay, Susan
    Khaitovich, Philipp
    Huber, Wolfgang
    Baker, Julie
    Anders, Simon
    Zhang, Yong E.
    Kaessmann, Henrik
    [J]. NATURE, 2019, 571 (7766) : 505 - +
  • [5] D Repurposing of promoters and enhancers during mammalian evolution
    Carelli, Francesco N.
    Liechti, Angelica
    Halbert, Jean
    Warnefors, Maria
    Kaessmann, Henrik
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [6] Chiu C, 2017, SCI REP, V7, P1
  • [7] DNA Methylation Increases Nucleosome Compaction and Rigidity
    Choy, John S.
    Wei, Sijie
    Lee, Ju Yeon
    Tan, Song
    Chu, Steven
    Lee, Tae-Hee
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (06) : 1782 - +
  • [8] Intraamniotic Zika virus inoculation of pregnant rhesus macaques produces fetal neurologic disease
    Coffey, Lark L.
    Keesler, Rebekah I.
    Pesavento, Patricia A.
    Woolard, Kevin
    Singapuri, Anil
    Watanabe, Jennifer
    Cruzen, Christina
    Christe, Kari L.
    Usachenko, Jodie
    Yee, JoAnn
    Heng, Victoria A.
    Bliss-Moreau, Eliza
    Reader, J. Rachel
    von Morgenland, Wilhelm
    Gibbons, Anne M.
    Jackson, Kenneth
    Ardeshir, Amir
    Heimsath, Holly
    Permar, Sallie
    Senthamaraikannan, Paranthaman
    Presicce, Pietro
    Kallapur, Suhas G.
    Linnen, Jeffrey M.
    Gao, Kui
    Orr, Robert
    MacGill, Tracy
    McClure, Michelle
    McFarland, Richard
    Morrison, John H.
    Van Rompay, Koen K. A.
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [9] Dynamic evolution of regulatory element ensembles in primate CD4+ T cells
    Danko, Charles G.
    Choate, Lauren A.
    Marks, Brooke A.
    Rice, Edward J.
    Wang, Zhong
    Chu, Tinyi
    Martins, Andre L.
    Dukler, Noah
    Coonrod, Scott A.
    Wojno, Elia D. Tait
    Lis, John T.
    Kraus, W. Lee
    Siepel, Adam
    [J]. NATURE ECOLOGY & EVOLUTION, 2018, 2 (03): : 537 - 548
  • [10] Prevention of tuberculosis in macaques after intravenous BCG immunization
    Darrah, Patricia A.
    Zeppa, Joseph J.
    Maiello, Pauline
    Hackney, Joshua A.
    Ii, Marc H. Wadsworth
    Hughes, Travis K.
    Pokkali, Supriya
    Swanson, Phillip A., II
    Grant, Nicole L.
    Rodgers, Mark A.
    Kamath, Megha
    Causgrove, Chelsea M.
    Laddy, Dominick J.
    Bonavia, Aurelio
    Casimiro, Danilo
    Lin, Philana Ling
    Klein, Edwin
    White, Alexander G.
    Scanga, Charles A.
    Shalek, Alex K.
    Roederer, Mario
    Flynn, JoAnne L.
    Seder, Robert A.
    [J]. NATURE, 2020, 577 (7788) : 95 - +