Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics

被引:90
作者
Nekrasov, Maxim [1 ]
Amrichova, Jana [1 ]
Parker, Brian J. [1 ]
Soboleva, Tatiana A. [1 ]
Jack, Cameron [1 ]
Williams, Rohan [1 ]
Huttley, Gavin A. [1 ]
Tremethick, David J. [1 ]
机构
[1] Australian Natl Univ, John Curtin Sch Med Res, Canberra, ACT 2601, Australia
基金
英国医学研究理事会;
关键词
NUCLEOSOME-FREE REGIONS; EARLY MAMMALIAN DEVELOPMENT; READ ALIGNMENT; HUMAN GENOME; MITOSIS; GENES;
D O I
10.1038/nsmb.2424
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Although it has been clearly established that well-positioned histone H2A.Z-containing nucleosomes flank the nucleosome-depleted region (NDR) at the transcriptional start site (TSS) of active mammalian genes, how this chromatin-based information is transmitted through the cell cycle is unknown. We show here that in mouse trophoblast stem cells, the amount of histone H2A.Z at promoters decreased during S phase, coinciding with homotypic (H2A.Z-H2A.Z) nucleosomes flanking the TSS becoming heterotypic (H2A.Z-H2A). To our surprise these nucleosomes remained heterotypic at M phase. At the TSS, we identified an unstable heterotypic histone H2A.Z-containing nucleosome in G1 phase that was lost after DNA replication. These dynamic changes at the TSS mirror a global expansion of the NDR at S and M phases, which, unexpectedly, is unrelated to transcriptional activity. Coincident with the loss of histone H2A.Z at promoters, histone H2A.Z is targeted to the centromere when mitosis begins.
引用
收藏
页码:1076 / +
页数:10
相关论文
共 50 条
[41]   Chromosome missegregation during anaphase triggers p53 cell cycle arrest through histone H3.3 Ser31 phosphorylation [J].
Hinchcliffel, Edward H. ;
Day, Charles A. ;
Karanjeet, Kul B. ;
Fadness, Sela ;
Langfald, Alyssa ;
Vaughan, Kevin T. ;
Dong, Zigang .
NATURE CELL BIOLOGY, 2016, 18 (06) :668-+
[42]   Distinct modes of centromere protein dynamics during cell cycle progression in Drosophila S2R+cells [J].
Lidsky, Peter V. ;
Sprenger, Frank ;
Lehner, Christian F. .
JOURNAL OF CELL SCIENCE, 2013, 126 (20) :4782-4793
[43]   THE KINETICS OF H1 HISTONE KINASE ACTIVATION DURING THE CELL-CYCLE OF WILD-TYPE AND WEE MUTANTS OF THE FISSION YEAST SCHIZOSACCHAROMYCES-POMBE [J].
CREANOR, J ;
MITCHISON, JM .
JOURNAL OF CELL SCIENCE, 1994, 107 :1197-1204
[44]   Timing of transcription during the cell cycle: Protein complexes binding to E2F, E2F/CLE, CDE/CHR, or CHR promoter elements define early and late cell cycle gene expression [J].
Mueller, Gerd A. ;
Stangner, Konstanze ;
Schmitt, Thomas ;
Wintsche, Axel ;
Engeland, Kurt .
ONCOTARGET, 2017, 8 (58) :97736-97748
[45]   Oxidative stress induces cell cycle-dependent Mre11 recruitment, ATM and Chk2 activation and histone H2AX phosphorylation [J].
Zhao, Hong ;
Traganos, Frank ;
Albino, Anthony P. ;
Darzynkiewicz, Zbigniew .
CELL CYCLE, 2008, 7 (10) :1490-1495
[46]   Constitutive histone H2AX phosphorylation on Ser-139 in cells untreated by genotoxic agents is cell-cycle phase specific and attenuated by scavenging reactive oxygen species [J].
Huang, Xuan ;
Tanaka, Toshiki ;
Kurose, Akira ;
Traganos, Frank ;
Darzynkiewicz, Zbigniew .
INTERNATIONAL JOURNAL OF ONCOLOGY, 2006, 29 (02) :495-501
[47]   A combination of fluorescent NFAT and H2B sensors uncovers dynamics of T cell activation in real time during CNS autoimmunity [J].
Lodygin, Dmitri ;
Odoardi, Francesca ;
Schlaeger, Christian ;
Koerner, Henrike ;
Kitz, Alexandra ;
Nosov, Michail ;
van den Brandt, Jens ;
Reichardt, Holger M. ;
Haberl, Michael ;
Fluegel, Alexander .
NATURE MEDICINE, 2013, 19 (06) :784-+
[48]   G9a/GLP-dependent histone H3K9me2 patterning during human hematopoietic stem cell lineage commitment [J].
Chen, Xiaoji ;
Skutt-Kakaria, Kyobi ;
Davison, Jerry ;
Ou, Yang-Li ;
Choi, Edward ;
Malik, Punam ;
Loeb, Keith ;
Wood, Brent ;
Georges, George ;
Torok-Storb, Beverly ;
Paddison, Patrick J. .
GENES & DEVELOPMENT, 2012, 26 (22) :2499-2511
[49]   CELL-DIVISION IN HIGHER-PLANTS - A CDC2 GENE, ITS 34-KDA PRODUCT, AND HISTONE-H1 KINASE-ACTIVITY IN PEA [J].
FEILER, HS ;
JACOBS, TW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (14) :5397-5401
[50]   Assessment of ATM phosphorylation on Ser-1981 induced by DNA topoisomerase I and II inhibitors in relation to Ser-139-histone H2AX phosphorylation, cell cycle phase, and apoptosis [J].
Kurose, A ;
Tanaka, T ;
Huang, X ;
Halicka, HD ;
Traganos, F ;
Dai', W ;
Darzynkiewicz, Z .
CYTOMETRY PART A, 2005, 68A (01) :1-9