Lifting-A nonreversible Markov chain Monte Carlo algorithm

被引:28
|
作者
Vucelja, Marija [1 ,2 ]
机构
[1] Rockefeller Univ, Ctr Studies Phys & Biol, 1230 York Ave, New York, NY 10065 USA
[2] Univ Virginia, Dept Phys, Charlottesville, VA 22904 USA
关键词
D O I
10.1119/1.4961596
中图分类号
G40 [教育学];
学科分类号
040101 ; 120403 ;
摘要
Markov chain Monte Carlo algorithms are invaluable tools for exploring stationary properties of physical systems, especially in situations where direct sampling is unfeasible. Common implementations of Monte Carlo algorithms employ reversible Markov chains. Reversible chains obey detailed balance and thus ensure that the system will eventually relax to equilibrium, though detailed balance is not necessary for convergence to equilibrium. We review nonreversible Markov chains, which violate detailed balance and yet still relax to a given target stationary distribution. In particular cases, nonreversible Markov chains are substantially better at sampling than the conventional reversible Markov chains with up to a square root improvement in the convergence time to the steady state. One kind of nonreversible Markov chain is constructed from the reversible ones by enlarging the state space and by modifying and adding extra transition rates to create non-reversible moves. Because of the augmentation of the state space, such chains are often referred to as lifted Markov Chains. We illustrate the use of lifted Markov chains for efficient sampling on several examples. The examples include sampling on a ring, sampling on a torus, the Ising model on a complete graph, and the one-dimensional Ising model. We also provide a pseudocode implementation, review related work, and discuss the applicability of such methods. (C) 2016 American Association of Physics Teachers.
引用
收藏
页码:958 / 968
页数:11
相关论文
共 50 条
  • [21] Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit
    Neumann, Jacob
    Lin, Yen Ting
    Mallela, Abhishek
    Miller, Ely F.
    Colvin, Joshua
    Duprat, Abell T.
    Chen, Ye
    Hlavacek, William S.
    Posner, Richard G.
    BIOINFORMATICS, 2022, 38 (06) : 1770 - 1772
  • [22] A Markov chain Monte Carlo algorithm for multiple imputation in large surveys
    Daniel Schunk
    AStA Advances in Statistical Analysis, 2008, 92 : 101 - 114
  • [23] Stochastic MIMO Detector Based on the Markov Chain Monte Carlo Algorithm
    Chen, Jienan
    Hu, Jianhao
    Sobelman, Gerald E.
    IEEE TRANSACTIONS ON SIGNAL PROCESSING, 2014, 62 (06) : 1454 - 1463
  • [24] On nonlinear Markov chain Monte Carlo
    Andrieu, Christophe
    Jasra, Ajay
    Doucet, Arnaud
    Del Moral, Pierre
    BERNOULLI, 2011, 17 (03) : 987 - 1014
  • [25] Structured Markov Chain Monte Carlo
    Sargent, DJ
    Hodges, JS
    Carlin, BP
    DIMENSION REDUCTION, COMPUTATIONAL COMPLEXITY AND INFORMATION, 1998, 30 : 191 - 191
  • [26] Evolutionary Markov chain Monte Carlo
    Drugan, MM
    Thierens, D
    ARTIFICIAL EVOLUTION, 2004, 2936 : 63 - 76
  • [27] Markov Chain Monte Carlo in Practice
    Jones, Galin L.
    Qin, Qian
    ANNUAL REVIEW OF STATISTICS AND ITS APPLICATION, 2022, 9 : 557 - 578
  • [28] Structured Markov chain Monte Carlo
    Sargent, DJ
    Hodges, JS
    Carlin, BP
    JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 2000, 9 (02) : 217 - 234
  • [29] Coreset Markov chain Monte Carlo
    Chen, Naitong
    Campbell, Trevor
    INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE AND STATISTICS, VOL 238, 2024, 238
  • [30] Multilevel Markov Chain Monte Carlo
    Dodwell, T. J.
    Ketelsen, C.
    Scheichl, R.
    Teckentrup, A. L.
    SIAM REVIEW, 2019, 61 (03) : 509 - 545