Vibrational self-consistent field calculations for spectroscopy of biological molecules: new algorithmic developments and applications
被引:168
作者:
Roy, Tapta Kanchan
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Hebrew Univ Jerusalem, Inst Chem, IL-91904 Jerusalem, Israel
Hebrew Univ Jerusalem, Fritz Haber Res Ctr, IL-91904 Jerusalem, IsraelHebrew Univ Jerusalem, Inst Chem, IL-91904 Jerusalem, Israel
Roy, Tapta Kanchan
[1
,2
]
Gerber, R. Benny
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机构:
Hebrew Univ Jerusalem, Inst Chem, IL-91904 Jerusalem, Israel
Hebrew Univ Jerusalem, Fritz Haber Res Ctr, IL-91904 Jerusalem, Israel
Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USAHebrew Univ Jerusalem, Inst Chem, IL-91904 Jerusalem, Israel
Gerber, R. Benny
[1
,2
,3
]
机构:
[1] Hebrew Univ Jerusalem, Inst Chem, IL-91904 Jerusalem, Israel
[2] Hebrew Univ Jerusalem, Fritz Haber Res Ctr, IL-91904 Jerusalem, Israel
[3] Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USA
This review describes the vibrational self-consistent field (VSCF) method and its other variants for computing anharmonic vibrational spectroscopy of biological molecules. The superiority and limitations of this algorithm are discussed with examples. The spectroscopic accuracy of the VSCF method is compared with experimental results and other available state-of-the-art algorithms for various biologically important systems. For large biological molecules with many vibrational modes, the scaling of computational effort is investigated. The accuracy of the vibrational spectra of biological molecules using the VSCF approach for different electronic structure methods is also assessed. Finally, a few open problems and challenges in this field are discussed.
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Abo-Riziq, Ali
;
Bushnell, John E.
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Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Bushnell, John E.
;
Crews, Bridgit
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Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Crews, Bridgit
;
Callahan, Michael
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机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Callahan, Michael
;
Grace, Louis
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机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Grace, Louis
;
De Vries, Mattanjah S.
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Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
机构:
Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USAUniv Calif Irvine, Dept Chem, Irvine, CA 92697 USA
Adesokan, Adeyemi A.
;
Gerber, R. B.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USA
Hebrew Univ Jerusalem, Dept Phys Chem, IL-91904 Jerusalem, Israel
Hebrew Univ Jerusalem, Fritz Haber Res Ctr, IL-91904 Jerusalem, IsraelUniv Calif Irvine, Dept Chem, Irvine, CA 92697 USA
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Abo-Riziq, Ali
;
Bushnell, John E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Bushnell, John E.
;
Crews, Bridgit
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Crews, Bridgit
;
Callahan, Michael
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Callahan, Michael
;
Grace, Louis
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
Grace, Louis
;
De Vries, Mattanjah S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USAUniv Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
机构:
Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USAUniv Calif Irvine, Dept Chem, Irvine, CA 92697 USA
Adesokan, Adeyemi A.
;
Gerber, R. B.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USA
Hebrew Univ Jerusalem, Dept Phys Chem, IL-91904 Jerusalem, Israel
Hebrew Univ Jerusalem, Fritz Haber Res Ctr, IL-91904 Jerusalem, IsraelUniv Calif Irvine, Dept Chem, Irvine, CA 92697 USA