Quencher-free linear probe with multiple fluorophores on an acyclic scaffold

被引:30
作者
Asanuma, Hiroyuki [1 ]
Akahane, Mariko [1 ]
Kondo, Nobuyo [1 ]
Osawa, Takuya [1 ]
Kato, Tomohiro [1 ]
Kashida, Hiromu [1 ]
机构
[1] Nagoya Univ, Grad Sch Engn, Chikusa Ku, Nagoya, Aichi 4648603, Japan
基金
日本科学技术振兴机构;
关键词
MOLECULAR BEACONS; LEUKEMIA-CELLS; DNA; HYBRIDIZATION; STEM; DESIGN; DUPLEX;
D O I
10.1039/c2sc20732j
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We have developed a new quencher-free stemless linear probe involving multiple perylenes incorporated through D-threoninol; each perylene is separated by intervening natural nucleotides. Without a substrate, the flexible linear probe does not emit fluorescence due to the self-quenching of the weakly interacting fluorophores. Upon hybridization with the target, intercalation of each dye between the base pairs results in emission of strong fluorescence. The maximum signal-background ratio attained was 180, and the response rate was significantly faster than that of a classic hairpin-forming molecular beacon.
引用
收藏
页码:3165 / 3169
页数:5
相关论文
共 37 条
[1]   A polycation-chaperoned in-stem molecular beacon system [J].
Asanuma, Hiroyuki ;
Osawa, Takuya ;
Kashida, Hiromu ;
Fujii, Taiga ;
Liang, Xingguo ;
Niwa, Kosuke ;
Yoshida, Yasuko ;
Shimadad, Naohiko ;
Maruyama, Atsushi .
CHEMICAL COMMUNICATIONS, 2012, 48 (12) :1760-1762
[2]   Perylene Attached to 2′-Amino-LNA: Synthesis, Incorporation into Oligonucleotides, and Remarkable Fluorescence Properties in Vitro and in Cell Culture [J].
Astakhova, Irina V. ;
Korshun, Vladimir A. ;
Jahn, Kasper ;
Kjems, Jorgen ;
Wengel, Jesper .
BIOCONJUGATE CHEMISTRY, 2008, 19 (10) :1995-2007
[3]   Fluorescent Color Readout of DNA Hybridization with Thiazole Orange as an Artificial DNA Base [J].
Berndl, Sina ;
Wagenknecht, Hans-Achim .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2009, 48 (13) :2418-2421
[4]   Signal control by self-assembly of fluorophores in a molecular beacon-a model study [J].
Biner, Sarah M. ;
Kummer, Dominic ;
Malinovskii, Vladimir L. ;
Haener, Robert .
ORGANIC & BIOMOLECULAR CHEMISTRY, 2011, 9 (08) :2628-2633
[5]   Enhanced growth suppression of Philadephia leukemia cells by targeting bcr3/abI2 and VEGF through antisense strategy [J].
Cong, XL ;
Li, B ;
Yang, RC ;
Feng, SZ ;
Chen, SJ ;
Han, ZC .
LEUKEMIA, 2005, 19 (09) :1517-1524
[6]   Molecular beacons with a homo-DNA stem: improving target selectivity [J].
Crey-Desbiolles, C ;
Ahn, DR ;
Leumann, CJ .
NUCLEIC ACIDS RESEARCH, 2005, 33 (08) :1-7
[7]   Fast Molecular Beacon Hybridization in Organic Solvents with Improved Target Specificity [J].
Dave, Neeshma ;
Liu, Juewen .
JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (47) :15694-15699
[8]   Molecular beacon: a multitask probe [J].
Goel, G ;
Kumar, A ;
Puniya, AK ;
Chen, W ;
Singh, K .
JOURNAL OF APPLIED MICROBIOLOGY, 2005, 99 (03) :435-442
[9]   A Highly Sensitive, Excimer-Controlled Molecular Beacon [J].
Haener, Robert ;
Biner, Sarah M. ;
Langenegger, Simon M. ;
Meng, Tao ;
Malinovskii, Vladimir L. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2010, 49 (07) :1227-1230
[10]   Coherent Quenching of a Fluorophore for the Design of a Highly Sensitive In-Stem Molecular Beacon [J].
Hara, Yuichi ;
Fujii, Taiga ;
Kashida, Hiromu ;
Sekiguchi, Koji ;
Liang, Xingguo ;
Niwa, Kosuke ;
Takase, Tomokazu ;
Yoshida, Yasuko ;
Asanuma, Hiroyuki .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2010, 49 (32) :5502-5506