共 104 条
Genomic analysis of plasmid content in food isolates of E. coli strongly supports its role as a reservoir for the horizontal transfer of virulence and antibiotic resistance genes
被引:13
作者:

Balbuena-Alonso, Maria G.
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Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico

Cortes-Cortes, Gerardo
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Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico
Univ Calif Santa Cruz, Dept Microbiol & Environm Toxicol, Santa Cruz, CA 95064 USA Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico

Kim, Jay W.
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Univ Calif Santa Cruz, Dept Microbiol & Environm Toxicol, Santa Cruz, CA 95064 USA Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico

Lozano-Zarain, Patricia
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Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico

Camps, Manel
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Univ Calif Santa Cruz, Dept Microbiol & Environm Toxicol, Santa Cruz, CA 95064 USA Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico

del Carmen Rocha-Gracia, Rosa
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Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico
机构:
[1] Benemerita Univ Autonoma Puebla, Ctr Invest Ciencias Microbiol, Microbiol, Inst Ciencias, Ciudad Univ, Puebla 72570, Mexico
[2] Univ Calif Santa Cruz, Dept Microbiol & Environm Toxicol, Santa Cruz, CA 95064 USA
来源:
关键词:
Escherichia coli;
Food plasmids;
Antimicrobial resistance;
Plasmid origin of replication;
Plasmid taxonomic units;
Comparative genomics;
PATHOGENIC ESCHERICHIA-COLI;
CHICKEN MEAT;
ENTEROBACTERIACEAE;
ANNOTATION;
EVOLUTION;
STRAINS;
HUMANS;
ST131;
D O I:
10.1016/j.plasmid.2022.102650
中图分类号:
Q3 [遗传学];
学科分类号:
071007 ;
090102 ;
摘要:
The link between E. coli strains contaminating foods and human disease is unclear, with some reports supporting a direct transmission of pathogenic strains via food and others highlighting their role as reservoirs for resistance and virulence genes. Here we take a genomics approach, analyzing a large set of fully-assembled genomic se-quences from E. coli available in GenBank. Most of the strains isolated in food are more closely related to each other than to clinical strains, arguing against a frequent direct transmission of pathogenic strains from food to the clinic. We also provide strong evidence of genetic exchanges between food and clinical strains that are facilitated by plasmids. This is based on an overlapped representation of virulence and resistance genes in plasmids isolated from these two sources. We identify clusters of phylogenetically-related plasmids that are largely responsible for the observed overlap and see evidence of specialization, with some food plasmid clusters preferentially trans-ferring virulence factors over resistance genes. Consistent with these observations, food plasmids have a high mobilization potential based on their plasmid taxonomic unit classification and on an analysis of mobilization gene content. We report antibiotic resistance genes of high clinical relevance and their specific incompatibility group associations. Finally, we also report a striking enrichment for adhesins in food plasmids and their asso-ciation with specific IncF replicon subtypes. The identification of food plasmids with specific markers (Inc and PTU combinations) as mediators of horizontal transfer between food and clinical strains opens new research avenues and should assist with the design of surveillance strategies.
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页数:17
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Wellcome Sanger Inst, Wellcome Genome Campus, Hinxton, England Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Parkhill, Julian
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Univ Cambridge, Dept Vet Med, Cambridge, England Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Hoang Le Phuc
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Childrens Hosp 1, Ho Chi Minh City, Vietnam Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Tran Thi Hong Chau
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Oxford Univ Clin Res Unit, Hosp Trop Dis, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Maskell, Duncan J.
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Univ Melbourne, Melbourne, Vic, Australia Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Perron, Gabriel G.
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Bard Coll, Dept Biol, Annandale On Hudson, NY 12504 USA Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Nguyen Minh Ngoc
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Childrens Hosp 2, Ho Chi Minh City, Vietnam Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Lu Lan Vi
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Oxford Univ Clin Res Unit, Hosp Trop Dis, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Adriaenssens, Evelien M.
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Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Baker, Stephen
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Univ Cambridge, Dept Med, Sch Clin Med, Cambridge Biomed Campus, Cambridge, England Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England

Mather, Alison E.
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Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England
Univ East Anglia, Norwich, Norfolk, England Quadram Inst Biosci, Norwich Res Pk, Norwich, Norfolk, England