Complete chloroplast genome sequence and phylogenetic analysis of Sinojackia sarcocarpa, an endemic plant in Southwest China

被引：7

作者：

Fan, Jing ^{[1
]}

Fu, Qin-Chao ^{[1
]}

Liang, Zi ^{[1
]}

机构：

[1] Leshan Normal Univ, Coll Life Sci, 778 Binhe Rd, Leshan 614004, Sichuan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期

关键词：

Sinojackia sarcocarpa; chloroplast genome; styracaceae; illumina sequencing;

D O I：

10.1080/23802359.2019.1597652

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Sinojackia sarcocarpa is an endangered plant endemic to China. Here, the complete chloroplast genome of S. sarcocarpa was sequenced and characterized. The total genome size is 158,737 bp, with a typical quadripartite structure including a pair of inverted repeat regions (IRs, 26,090 bp) separated by a large single copy (LSC, 88,002 bp) region and a small single copy (SSC, 18,555 bp) region. The genome contains 137 genes, including 90 protein-coding genes, 38 transfer RNA genes, and 8 ribosomal RNA genes. Phylogenetic analysis revealed that S. sarcocarpa is closely related to Sinojackia xylocarpa and Sinojackia rehderiana, but forms an independent evolutionary branch.

引用

页码：1350 / 1351

页数：2

共 9 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Bankevich, Anton
Nurk, Sergey
Antipov, Dmitry
Gurevich, Alexey A.
Dvorkin, Mikhail
Kulikov, Alexander S.
Lesin, Valery M.
Nikolenko, Sergey I.
Son Pham
Prjibelski, Andrey D.
Pyshkin, Alexey V.
Sirotkin, Alexander V.
Vyahhi, Nikolay
Tesler, Glenn
Alekseyev, Max A.
Pevzner, Pavel A.
[J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
[2] The complete chloroplast genome of Leontice incerta and phylogeny of Berberidaceae
He, Peizi
Ma, Qing
Dong, Meifang
Yang, Zhaoping
Liu, Luxian
[J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 101 - 102
[3] PLANN: A COMMAND-LINE APPLICATION FOR ANNOTATING PLASTOME SEQUENCES
Huang, Daisie I.
Cronk, Quentin C. B.
[J]. APPLICATIONS IN PLANT SCIENCES, 2015, 3 (08):
[4] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Katoh, Kazutaka
Standley, Daron M.
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
[5] Luo L. Q., 1992, Acta Scientiarum Naturalium Universitatis Sunyatseni, V31, P78
[6] NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
Patel, Ravi K.
Jain, Mukesh
[J]. PLOS ONE, 2012, 7 (02):
[7] Tamura K, 2013, MOL BIOL EVOL, V30, P2725, DOI [10.1093/molbev/mst197, 10.1093/molbev/msr121]
[8] Divergence time and evolutionary rate estimation with multilocus data
Thorne, JL
Kishino, H
[J]. SYSTEMATIC BIOLOGY, 2002, 51 (05) : 689 - 702
[9] Anticancer Activity of 2α, 3α, 19β, 23β-Tetrahydroxyurs-12-en-28-oic Acid THA), a Novel Triterpenoid Isolated from Sinojackia sarcocarpa
Wang, Ouchen
Liu, Sujun
Zou, Jiawei
Lu, Liting
Chen, Lin
Qiu, Sunquan
Li, He
Lu, Xincheng
[J]. PLOS ONE, 2011, 6 (06):

← 1 →