Mutation screening of IRF6 among families with non-syndromic oral clefts and identification of two novel variants: Review of the literature

被引:18
作者
Salahshourifar, Iman [1 ,2 ]
Sulaiman, Wan Azman Wan [2 ]
Halim, Ahmad Sukari [2 ]
Zilfalil, Bin Alwi [1 ]
机构
[1] Univ Sains Malaysia, Ctr Human Genome, Kubang Kerian 16150, Kelantan, Malaysia
[2] Univ Sains Malaysia, Reconstruct Sci Unit, Kubang Kerian 16150, Kelantan, Malaysia
关键词
Interferon regulatory factor 6 (IRF6); Cleft lip only; Non-syndromic oral clefts; Mixed clefting; Van der Woude syndrome; OROFACIAL CLEFTS; LIP; PALATE; GENE; ASSOCIATION; WOUDE; RISK; VAN; DISRUPTION; PREDICTION;
D O I
10.1016/j.ejmg.2012.02.006
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Non-syndromic oral clefts share the main clinical features of Van der Woude Syndrome (VWS), with the exception of the lower lip pit. Thus, about 15% of VWS cases are indistinguishable from cases with non-syndromic oral clefts. IRF6 mutations are the major cause of VWS; however, variants in this gene show strong association with non-syndromic oral clefts, with a higher increased risk among cases with cleft lip only (CLO). A total of 39 individuals, including 16 patients with CLO and 23 patients with a family history of cleft, were examined for IRF6 mutations in the present study. Seven variants, including five known (c.-75-4 A>; G, c.-73T>; C, c.459G>; T 5, c.820G>; A, and c. 1060 + 37C>; T) and two novel (c.-75-23G>; C and c.1380G>; T), were found. Both novel variants were inherited from non-affected parents and we did not find also in the 120 control chromosomes. In silico analysis revealed that both c.1380G>; T and c.-75-23G>; C variants may disrupts a putative exonic splicing enhancer and intronic splicing binding site for SC35, respectively. Taken together, the presence of deleterious IRF6 variants in patients with non-syndromic oral clefts could be most likely an evidence for VWS. While, IRF6 variants could, at best, contribute to clefting as part of a complex inheritance pattern, with both additional genes and environmental factors having a role. (c) 2012 Elsevier Masson SAS. All rights reserved.
引用
收藏
页码:389 / 393
页数:5
相关论文
共 30 条
[1]   A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4 [J].
Beaty, Terri H. ;
Murray, Jeffrey C. ;
Marazita, Mary L. ;
Munger, Ronald G. ;
Ruczinski, Ingo ;
Hetmanski, Jacqueline B. ;
Liang, Kung Yee ;
Wu, Tao ;
Murray, Tanda ;
Fallin, M. Daniele ;
Redett, Richard A. ;
Raymond, Gerald ;
Schwender, Holger ;
Jin, Sheng-Chih ;
Cooper, Margaret E. ;
Dunnwald, Martine ;
Mansilla, Maria A. ;
Leslie, Elizabeth ;
Bullard, Stephen ;
Lidral, Andrew C. ;
Moreno, Lina M. ;
Menezes, Renato ;
Vieira, Alexandre R. ;
Petrin, Aline ;
Wilcox, Allen J. ;
Lie, Rolv T. ;
Jabs, Ethylin W. ;
Wu-Chou, Yah Huei ;
Chen, Philip K. ;
Wang, Hong ;
Ye, Xiaoqian ;
Huang, Shangzhi ;
Yeow, Vincent ;
Chong, Samuel S. ;
Jee, Sun Ha ;
Shi, Bing ;
Christensen, Kaare ;
Melbye, Mads ;
Doheny, Kimberly F. ;
Pugh, Elizabeth W. ;
Ling, Hua ;
Castilla, Eduardo E. ;
Czeizel, Andrew E. ;
Ma, Lian ;
Field, L. Leigh ;
Brody, Lawrence ;
Pangilinan, Faith ;
Mills, James L. ;
Molloy, Anne M. ;
Kirke, Peadar N. .
NATURE GENETICS, 2010, 42 (06) :525-U76
[2]   Mutation screening in the IRF6-gene in patients with apparently nonsyndromic orofacial clefts and a positive family history suggestive of autosomal-dominant inheritance [J].
Birnbaum, Stefanie ;
Reutter, Heiko ;
Lauster, Carola ;
Scheer, Martin ;
Schmidt, Guel ;
Saffar, Mitra ;
Martinis, Markus ;
Hemprich, Alexander ;
Henschke, Henning ;
Kramer, Franz-Josef ;
Mangold, Elisabeth .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2008, 146A (06) :787-790
[3]   Two silent substitutions in the PDHA1 gene cause exon 5 skipping by disruption of a putative exonic splicing enhancer [J].
Boichard, A. ;
Venet, L. ;
Naas, T. ;
Boutron, A. ;
Chevret, L. ;
de Baulny, H. Ogier ;
De Lonlay, P. ;
Legrand, A. ;
Nordman, P. ;
Brivet, M. .
MOLECULAR GENETICS AND METABOLISM, 2008, 93 (03) :323-330
[4]  
BURDICK AB, 1985, J CRAN GENET DEV BIO, V5, P181
[5]   A founder synonymous COL7A1 mutation in three Danish families with dominant dystrophic epidermolysis bullosa pruriginosa identifies exonic regulatory sequences required for exon 87 splicing [J].
Covaciu, C. ;
Grosso, F. ;
Pisaneschi, E. ;
Zambruno, G. ;
Gregersen, P. A. ;
Sommerlund, M. ;
Hertz, J. M. ;
Castiglia, D. .
BRITISH JOURNAL OF DERMATOLOGY, 2011, 165 (03) :678-682
[6]   IRF6 Screening of Syndromic and a priori Non-Syndromic Cleft Lip and Palate Patients: Identification of a New Type of Minor VWS Sign [J].
Desmyter, L. ;
Ghassibe, M. ;
Revencu, N. ;
Boute, O. ;
Lees, M. ;
Francois, G. ;
Verellen-Dumoulin, C. ;
Sznajer, Y. ;
Moncla, A. ;
Benateau, H. ;
Claes, K. ;
Devriendt, K. ;
Mathieu, M. ;
Van Maldergem, L. ;
Addor, M. -C. ;
Drouin-Garraud, V. ;
Mortier, G. ;
Bouma, M. ;
Dieux-Coeslier, A. ;
Genevieve, D. ;
Goldenberg, A. ;
Gozu, A. ;
Makrythanasis, P. ;
McEntagart, M. ;
Sanchez, A. ;
Vilain, C. ;
Vermeer, S. ;
Connell, F. ;
Verheij, J. ;
Manouvrier, S. ;
Pierquin, G. ;
Odent, S. ;
Holder-Espinasse, M. ;
Vincent-Delorme, C. ;
Gillerot, Y. ;
Vanwijck, R. ;
Bayet, B. ;
Vikkula, M. .
MOLECULAR SYNDROMOLOGY, 2010, 1 (02) :67-74
[7]   Prevalence and nonrandom distribution of exonic mutations in interferon regulatory factor 6 in 307 families with Van der Woude syndrome and 37 families with popliteal pterygium syndrome [J].
Ferreira de Lima, Renata. L. L. ;
Hoper, Sarah A. ;
Ghassibe, Michella ;
Cooper, Margaret E. ;
Rorick, Nicholas K. ;
Kondo, Shinji ;
Katz, Lori ;
Marazita, Mary L. ;
Compton, John ;
Bale, Sherri ;
Hehr, Ute ;
Dixon, Michael J. ;
Daack-Hirsch, Sandra ;
Boute, Odile ;
Bayet, Benedicte ;
Revencu, Nicole ;
Verellen-Dumoulin, Christine ;
Vikkula, Miikka ;
Richieri-Costa, Antonio ;
Moretti-Ferreira, Danilo ;
Murray, Jeffrey C. ;
Schutte, Brain C. .
GENETICS IN MEDICINE, 2009, 11 (04) :241-247
[8]   Orofacial Clefts in the National Birth Defects Prevention Study, 1997-2004 [J].
Genisca, Alicia E. ;
Frias, Jaime L. ;
Broussard, Cheryl S. ;
Honein, Margaret A. ;
Lammer, Edward J. ;
Moore, Cynthia A. ;
Shaw, Gary M. ;
Murray, Jeffrey C. ;
Yang, Wei ;
Rasmussen, Sonja A. .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2009, 149A (06) :1149-1158
[9]   Six families with van der Woude and/or popliteal pterygium syndrome:: all with a mutation in the IRF6 gene -: art. no. e15 [J].
Ghassibé, M ;
Revencu, N ;
Bayet, B ;
Gillerot, Y ;
Vanwijck, R ;
Verellen-Dumoulin, C ;
Vikkula, M .
JOURNAL OF MEDICAL GENETICS, 2004, 41 (02) :e15
[10]  
Hall T. A., NUCL ACIDS S SER, V41, P95