Stochastic analysis of biochemical reaction networks with absolute concentration robustness

被引:47
作者
Anderson, David F. [1 ]
Enciso, German A. [2 ]
Johnston, Matthew D. [1 ]
机构
[1] Univ Wisconsin, Dept Math, Madison, WI 53706 USA
[2] Univ Calif Irvine, Dept Math, Irvine, CA 92717 USA
基金
美国国家科学基金会;
关键词
systems biology; biomathematics; QUASI-STATIONARY DISTRIBUTIONS; COMPLEX ISOTHERMAL REACTORS; MULTIPLE STEADY-STATES; CHEMICAL-REACTION; ENVZ; PHOSPHORYLATION; STABILITY; SYSTEMS; SIS;
D O I
10.1098/rsif.2013.0943
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
It has recently been shown that structural conditions on the reaction network, rather than a 'fine-tuning' of system parameters, often suffice to impart 'absolute concentration robustness' (ACR) on a wide class of biologically relevant, deterministically modelled mass-action systems. We show here that fundamentally different conclusions about the long-term behaviour of such systems are reached if the systems are instead modelled with stochastic dynamics and a discrete state space. Specifically, we characterize a large class of models that exhibit convergence to a positive robust equilibrium in the deterministic setting, whereas trajectories of the corresponding stochastic models are necessarily absorbed by a set of states that reside on the boundary of the state space, i.e. the system undergoes an extinction event. If the time to extinction is large relative to the relevant timescales of the system, the process will appear to settle down to a stationary distribution long before the inevitable extinction will occur. This quasi-stationary distribution is considered for two systems taken from the literature, and results consistent with ACR are recovered by showing that the quasi-stationary distribution of the robust species approaches a Poisson distribution.
引用
收藏
页数:8
相关论文
共 44 条
[41]   A quasistationary analysis of a stochastic chemical reaction: Keizer's paradox [J].
Vellela M. ;
Qian H. .
Bulletin of Mathematical Biology, 2007, 69 (5) :1727-1746
[42]  
WEISS G H, 1971, Mathematical Biosciences, V11, P261, DOI 10.1016/0025-5564(71)90087-3
[43]   Phosphatase activity of histidine kinase EnvZ without kinase catalytic domain [J].
Zhu, Y ;
Qin, L ;
Yoshida, T ;
Inouye, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (14) :7808-7813
[44]  
PLOS COMPUT BIOL, V7, P1, DOI DOI 10.1371/J0URNAL.PCBI