Enabling Large-Scale Biomedical Analysis in the Cloud

被引:6
作者
Lin, Ying-Chih [1 ,2 ]
Yu, Chin-Sheng [1 ,3 ]
Lin, Yen-Jen [4 ]
机构
[1] Feng Chia Univ, Masters Program Biomed Informat & Biomed Engn, Taichung 40724, Taiwan
[2] Feng Chia Univ, Dept Appl Math, Taichung 40724, Taiwan
[3] Feng Chia Univ, Dept Informat Engn & Comp Sci, Taichung 40724, Taiwan
[4] Natl Tsing Hua Univ, Dept Comp Sci, Hsinchu 30013, Taiwan
关键词
MAPREDUCE; FRAMEWORK;
D O I
10.1155/2013/185679
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Recent progress in high-throughput instrumentations has led to an astonishing growth in both volume and complexity of biomedical data collected from various sources. The planet-size data brings serious challenges to the storage and computing technologies. Cloud computing is an alternative to crack the nut because it gives concurrent consideration to enable storage and high-performance computing on large-scale data. This work briefly introduces the data intensive computing system and summarizes existing cloud-based resources in bioinformatics. These developments and applications would facilitate biomedical research to make the vast amount of diversification data meaningful and usable.
引用
收藏
页数:6
相关论文
共 69 条
[51]   Scientific Computing in the Cloud [J].
Rehr, John J. ;
Vila, Fernando D. ;
Gardner, Jeffrey P. ;
Svec, Lucas ;
Prange, Micah .
COMPUTING IN SCIENCE & ENGINEERING, 2010, 12 (03) :34-43
[52]   Cloud computing: A new business paradigm for biomedical information sharing [J].
Rosenthal, Arnon ;
Mork, Peter ;
Li, Maya Hao ;
Stanford, Jean ;
Koester, David ;
Reynolds, Patti .
JOURNAL OF BIOMEDICAL INFORMATICS, 2010, 43 (02) :342-353
[53]   A Survey of Large Scale Data Management Approaches in Cloud Environments [J].
Sakr, Sherif ;
Liu, Anna ;
Batista, Daniel M. ;
Alomari, Mohammad .
IEEE COMMUNICATIONS SURVEYS AND TUTORIALS, 2011, 13 (03) :311-336
[54]   Computational solutions to large-scale data management and analysis [J].
Schadt, Eric E. ;
Linderman, Michael D. ;
Sorenson, Jon ;
Lee, Lawrence ;
Nolan, Garry P. .
NATURE REVIEWS GENETICS, 2010, 11 (09) :647-657
[55]   Assembly of large genomes using second-generation sequencing [J].
Schatz, Michael C. ;
Delcher, Arthur L. ;
Salzberg, Steven L. .
GENOME RESEARCH, 2010, 20 (09) :1165-1173
[56]   CloudBurst: highly sensitive read mapping with MapReduce [J].
Schatz, Michael C. .
BIOINFORMATICS, 2009, 25 (11) :1363-1369
[57]   A survey of GPU-based medical image computing techniques [J].
Shi, Lin ;
Liu, Wen ;
Zhang, Heye ;
Xie, Yongming ;
Wang, Defeng .
QUANTITATIVE IMAGING IN MEDICINE AND SURGERY, 2012, 2 (03) :188-206
[58]   Cloud Based Medical Image Exchange-Security Challenges [J].
Shini, S. G. ;
Thomas, Tony ;
Chithraranjan, K. .
INTERNATIONAL CONFERENCE ON MODELLING OPTIMIZATION AND COMPUTING, 2012, 38 :3454-3461
[59]   Archiving next generation sequencing data [J].
Shumway, Martin ;
Cochrane, Guy ;
Sugawara, Hideaki .
NUCLEIC ACIDS RESEARCH, 2010, 38 :D870-D871
[60]   Safety Assurance Factors for Electronic Health Record Resilience (SAFER): study protocol [J].
Singh, Hardeep ;
Ash, Joan S. ;
Sittig, Dean F. .
BMC MEDICAL INFORMATICS AND DECISION MAKING, 2013, 13