Enabling Large-Scale Biomedical Analysis in the Cloud

被引:6
作者
Lin, Ying-Chih [1 ,2 ]
Yu, Chin-Sheng [1 ,3 ]
Lin, Yen-Jen [4 ]
机构
[1] Feng Chia Univ, Masters Program Biomed Informat & Biomed Engn, Taichung 40724, Taiwan
[2] Feng Chia Univ, Dept Appl Math, Taichung 40724, Taiwan
[3] Feng Chia Univ, Dept Informat Engn & Comp Sci, Taichung 40724, Taiwan
[4] Natl Tsing Hua Univ, Dept Comp Sci, Hsinchu 30013, Taiwan
关键词
MAPREDUCE; FRAMEWORK;
D O I
10.1155/2013/185679
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Recent progress in high-throughput instrumentations has led to an astonishing growth in both volume and complexity of biomedical data collected from various sources. The planet-size data brings serious challenges to the storage and computing technologies. Cloud computing is an alternative to crack the nut because it gives concurrent consideration to enable storage and high-performance computing on large-scale data. This work briefly introduces the data intensive computing system and summarizes existing cloud-based resources in bioinformatics. These developments and applications would facilitate biomedical research to make the vast amount of diversification data meaningful and usable.
引用
收藏
页数:6
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共 69 条
[1]  
Ahuja SP., 2012, Network and Communication Technologies, V1, P12, DOI DOI 10.5539/NCT.V1N2P12
[2]   Fractal MapReduce decomposition of sequence alignment [J].
Almeida, Jonas S. ;
Grueneberg, Alexander ;
Maass, Wolfgang ;
Vinga, Susana .
ALGORITHMS FOR MOLECULAR BIOLOGY, 2012, 7
[3]   An integrated map of genetic variation from 1,092 human genomes [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Schmidt, Jeanette P. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Dinh, Huyen ;
Kovar, Christie ;
Lee, Sandra ;
Lewis, Lora ;
Muzny, Donna ;
Reid, Jeff ;
Wang, Min ;
Wang, Jun ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Li, Zhuo ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Su, Zhe ;
Tai, Shuaishuai ;
Tang, Meifang .
NATURE, 2012, 491 (7422) :56-65
[4]  
[Anonymous], 2011, BMC BIOINFORMATICS
[5]   DICOM relay over the cloud [J].
Bastiao Silva, Luis A. ;
Costa, Carlos ;
Oliveira, Jose Luis .
INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 2013, 8 (03) :323-333
[6]   Data-Intensive Scalable Computing for Scientific Applications [J].
Bryant, Randal E. .
COMPUTING IN SCIENCE & ENGINEERING, 2011, 13 (06) :25-33
[7]   Cloud computing and emerging IT platforms: Vision, hype, and reality for delivering computing as the 5th utility [J].
Buyya, Rajkumar ;
Yeo, Chee Shin ;
Venugopal, Srikumar ;
Broberg, James ;
Brandic, Ivona .
FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2009, 25 (06) :599-616
[8]   Bio and health informatics meets cloud : BioVLab as an example [J].
Chae H. ;
Jung I. ;
Lee H. ;
Marru S. ;
Lee S.-W. ;
Kim S. .
Health Information Science and Systems, 1 (1)
[9]   Human genetic susceptibility to infectious disease [J].
Chapman, Stephen J. ;
Hill, Adrian V. S. .
NATURE REVIEWS GENETICS, 2012, 13 (03) :175-188
[10]   Translational Biomedical Informatics in the Cloud: Present and Future [J].
Chen, Jiajia ;
Qian, Fuliang ;
Yan, Wenying ;
Shen, Bairong .
BIOMED RESEARCH INTERNATIONAL, 2013, 2013