Identification of potential inhibitors of SARS-CoV-2 main protease from Aloe vera compounds: A molecular docking study

被引:43
作者
Mpiana, Pius T. [1 ]
Ngbolua, Koto-te-Nyiwa [2 ,3 ]
Tshibangu, Damien S. T. [1 ]
Kilembe, Jason T. [1 ]
Gbolo, Benjamin Z. [2 ,3 ]
Mwanangombo, Domaine T. [1 ]
Inkoto, Clement L. [2 ]
Lengbiye, Emmanuel M. [2 ]
Mbadiko, Clement M. [2 ]
Matondo, Aristote [1 ]
Bongo, Gedeon N. [2 ]
Tshilanda, Dorothee D. [1 ]
机构
[1] Univ Kinshasa, Dept Chem, Fac Sci, POB 190, Kinshasa 11, DEM REP CONGO
[2] Univ Kinshasa, Fac Sci, Dept Biol, POB 190, Kinshasa 11, DEM REP CONGO
[3] Univ Gbado Lite, Fac Med, Dept Basic Sci, POB 111, Gbado Lite, DEM REP CONGO
关键词
Molecular docking; SARS-CoV-2; Aloe vera; COVID-19; Antiviral activity; ADMET properties; SARS-COV; CORONAVIRUS;
D O I
10.1016/j.cplett.2020.137751
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
SARS-CoV-2 is the pathogen agent of the new corona virus disease that appeared at the end of 2019 in China. There is, currently, no effective treatment against COVID-19. We report in this study a molecular docking study of ten Aloe vera molecules with the main protease (3CLpro) responsible for the replication of coronaviruses. The outcome of their molecular simulation and ADMET properties reveal three potential inhibitors of the enzyme (ligands 6, 1 and 8) with a clear preference of ligand 6 that has the highest binding energy (-7.9 kcal/mol) and fully obeys the Lipinski's rule of five.
引用
收藏
页数:7
相关论文
共 49 条
[11]   Interactions between temozolomide and guanine and its S and Se-substituted analogues [J].
Kasende, Okuma Emile ;
Matondo, Aristote ;
Muya, Jules Tshishimbi ;
Scheiner, Steve .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2017, 117 (03) :157-169
[12]  
Khaerunnisa S., 2020, POTENTIAL INHIBITOR, DOI [10.20944/preprints202003.0226.v1., DOI 10.20944/PREPRINTS202003.0226.V1]
[13]   Tyrosinase inhibitory components from Aloe vera and their antiviral activity [J].
Kim, Jang Hoon ;
Yoon, Ju-Yeon ;
Yang, Seo Young ;
Choi, Seung-Kook ;
Kwon, Sun Jung ;
Cho, In Sook ;
Jeong, Min Hee ;
Kim, Young Ho ;
Choi, Gug Seoun .
JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, 2017, 32 (01) :78-83
[14]  
Kroll David J., 2001, Journal of Herbal Pharmacotherapy, V1, P3, DOI 10.1080/J157v01n02_02
[15]   Identification, synthesis and evaluation of SARS-CoV and MERS-CoV 3C-like protease inhibitors [J].
Kumar, Vathan ;
Tan, Kian-Pin ;
Wang, Ying-Ming ;
Lin, Sheng-Wei ;
Liang, Po-Huang .
BIOORGANIC & MEDICINAL CHEMISTRY, 2016, 24 (13) :3035-3042
[16]   Computational analysis of calculated physicochemical and ADMET properties of protein-protein interaction inhibitors [J].
Lagorce, David ;
Douguet, Dominique ;
Miteva, Maria A. ;
Villoutreix, Bruno O. .
SCIENTIFIC REPORTS, 2017, 7
[17]  
Lee SK, 2004, EUROQSAR, V9, P5
[18]  
Lin Liang-Tzung, 2014, J Tradit Complement Med, V4, P24, DOI 10.4103/2225-4110.124335
[19]   Research and Development on Therapeutic Agents and Vaccines for COVID-19 and Related Human Coronavirus Diseases [J].
Liu, Cynthia ;
Zhou, Qiongqiong ;
Li, Yingzhu ;
Garner, Linda, V ;
Watkins, Steve P. ;
Carter, Linda J. ;
Smoot, Jeffrey ;
Gregg, Anne C. ;
Daniels, Angela D. ;
Jervey, Susan ;
Albaiu, Dana .
ACS CENTRAL SCIENCE, 2020, 6 (03) :315-331
[20]   Unravelling syn- and anti- orientation in the regioselectivity of carbonyl groups of 5-fluorouracil an anticancer drug toward proton donors [J].
Matondo, Aristote ;
Mukeba, Christian Tshikala ;
Muzomwe, Mayaliwa ;
Nsimba, Beaudrique Mboko ;
Tsalu, Philippe Vuka .
CHEMICAL PHYSICS LETTERS, 2018, 712 :196-207