Identification of metabolism-related genes for predicting peritoneal metastasis in patients with gastric cancer

被引:6
作者
Tian, Chenyu [1 ]
Zhao, Junjie [1 ]
Liu, Dan [1 ]
Sun, Jie [1 ]
Ji, Chengbo [1 ]
Jiang, Quan [1 ]
Li, Haojie [1 ]
Wang, Xuefei [1 ]
Sun, Yihong [1 ]
机构
[1] Fudan Univ, Zhongshan Hosp, Dept Gen Surg, Shanghai, Peoples R China
来源
BMC GENOMIC DATA | 2022年 / 23卷 / 01期
基金
中国国家自然科学基金;
关键词
Gastric cancer; Metabolism; Peritoneal metastasis; Gene; OVARIAN-CANCER; PROMOTES; PATHWAY;
D O I
10.1186/s12863-022-01096-0
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Objective: The reprogramming of metabolism is an important factor in the metastatic process of cancer. In our study, we intended to investigate the predictive value of metabolism-related genes (MRGs) in recurrent gastric cancer (GC) patients with peritoneal metastasis.Methods: The sequencing data of mRNA of GC patients were obtained from Asian Cancer Research Group (ACRG) and the GEO databases (GSE53276). The differentially expressed MRGs (DE-MRGs) between a cell line without peritoneal metastasis (HSC60) and one with peritoneal metastasis (60As6) were analyzed with the Limma package. According to the LASSO regression, eight MRGs were identified as crucially related to peritoneal seeding recurrence in patients. Then, disease free survival related genes were screened using Cox regression, and a promising prognostic model was constructed based on 8 MRGs. We trained and verified it in two independent cohort.Results: We confirmed 713 DE-MRGs and the enriched pathways. Pathway analysis found that the MRG-related pathways were related to tumor metabolism development. With the help of Kaplan-Meier analysis, we found that the group with higher risk scores had worse rates of peritoneal seeding recurrence than the group with lower scores in the cohorts.Conclusions: This study developed an eight-gene signature correlated with metabolism that could predict peri-toneal seeding recurrence for GC patients. This signature could be a promising prognostic model, providing better strategy in treatment.
引用
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页数:11
相关论文
共 29 条
[1]   Angiopoietin-2-integrin α5β1 signaling enhances vascular fatty acid transport and prevents ectopic lipid-induced insulin resistance [J].
Bae, Hosung ;
Hong, Ki Yong ;
Lee, Choong-kun ;
Jang, Cholsoon ;
Lee, Seung-Jun ;
Choe, Kibaek ;
Offermanns, Stefan ;
He, Yulong ;
Lee, Hyuek Jong ;
Koh, Gou Young .
NATURE COMMUNICATIONS, 2020, 11 (01)
[2]   Transcriptome analysis reveals an altered expression profile of zinc transporters in colorectal cancer [J].
Barresi, Vincenza ;
Valenti, Giovanna ;
Spampinato, Giorgia ;
Musso, Nicolo ;
Castorina, Sergio ;
Rizzarelli, Enrico ;
Condorelli, Daniele Filippo .
JOURNAL OF CELLULAR BIOCHEMISTRY, 2018, 119 (12) :9707-9719
[3]   Transmission of glioblastoma multiforme after bilateral lung transplantation [J].
Chen, Hongbin ;
Shah, Ashish S. ;
Girgis, Reda E. ;
Grossman, Stuart A. .
JOURNAL OF CLINICAL ONCOLOGY, 2008, 26 (19) :3284-3285
[4]   Cancer Statistics in China, 2015 [J].
Chen, Wanqing ;
Zheng, Rongshou ;
Baade, Peter D. ;
Zhang, Siwei ;
Zeng, Hongmei ;
Bray, Freddie ;
Jemal, Ahmedin ;
Yu, Xue Qin ;
He, Jie .
CA-A CANCER JOURNAL FOR CLINICIANS, 2016, 66 (02) :115-132
[5]   Intraperitoneal chemotherapy in advanced gastric cancer. Meta-analysis of randomized trials [J].
Coccolini, F. ;
Cotte, E. ;
Glehen, O. ;
Lotti, M. ;
Poiasina, E. ;
Catena, F. ;
Yonemura, Y. ;
Ansaloni, L. .
EJSO, 2014, 40 (01) :12-26
[6]  
Disibio G, 2008, ARCH PATHOL LAB MED, V132, P931, DOI 10.1043/1543-2165(2008)132[931:MPOCRF]2.0.CO
[7]  
2
[8]   Adipokine Apelin/APJ Pathway Promotes Peritoneal Dissemination of Ovarian Cancer Cells by Regulating Lipid Metabolism [J].
Dogra, Samrita ;
Neelakantan, Deepika ;
Patel, Maulin M. ;
Griesel, Beth ;
Olson, Ann ;
Woo, Sukyung .
MOLECULAR CANCER RESEARCH, 2021, 19 (09) :1534-1545
[9]   Genetic Variation in VKORC1 and Risk for Osteoporosis [J].
He, Jin ;
Xie, Hua ;
Yan, Chengyuan ;
Sun, Yawen ;
Xu, Zhonghua ;
Zhang, Xing .
ARCHIVES OF MEDICAL RESEARCH, 2021, 52 (02) :211-216
[10]   Aberrant fatty acid metabolism in skeletal muscle contributes to insulin resistance in zinc transporter 7 (znt7)-knockout mice [J].
Huang, Liping ;
Tepaamorndech, Surapun ;
Kirschke, Catherine P. ;
Newman, John W. ;
Keyes, William R. ;
Pedersen, Theresa L. ;
Dumnil, Jureeporn .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2018, 293 (20) :7549-7563