Digital reconstructions of neuronal morphology: three decades of research trends

被引:89
作者
Halavi, Maryam [1 ]
Hamilton, Kelly A. [1 ]
Parekh, Ruchi [1 ]
Ascoli, Giorgio A. [1 ]
机构
[1] George Mason Univ, Krasnow Inst Adv Study, Mol Neurosci Dept, Ctr Neural Informat Struct & Plast, Fairfax, VA 22030 USA
关键词
neuron morphology; digital reconstruction; NeuroMorpho.Org; three-dimensional reconstruction; data mining; literature mining; data sharing; potential connectivity;
D O I
10.3389/fnins.2012.00049
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
The importance of neuronal morphology has been recognized from the early days of neuroscience. Elucidating the functional roles of axonal and dendritic arbors in synaptic integration, signal transmission, network connectivity, and circuit dynamics requires quantitative analyses of digital three-dimensional reconstructions. We extensively searched the scientific literature for all original reports describing reconstructions of neuronal morphology since the advent of this technique three decades ago. From almost 50,000 titles, 30,000 abstracts, and more than 10,000 full-text articles, we identified 902 publications describing -44,000 digital reconstructions. Reviewing the growth of this field exposed general research trends on specific animal species, brain regions, neuron types, and experimental approaches. The entire bibliography, annotated with relevant metadata and (wherever available) direct links to the underlying digital data, is accessible at NeuroMorpho. Org.
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页数:11
相关论文
共 51 条
[1]   NeuroMorpho.Org: A central resource for neuronal morphologies [J].
Ascoli, Giorgio A. ;
Donohue, Duncan E. ;
Halavi, Maryam .
JOURNAL OF NEUROSCIENCE, 2007, 27 (35) :9247-9251
[2]   Principal Curves as Skeletons of Tubular Objects [J].
Bas, Erhan ;
Erdogmus, Deniz .
NEUROINFORMATICS, 2011, 9 (2-3) :181-191
[3]  
BLINKOV S M, 1968, Vestnik Akademii Meditsinskikh Nauk SSSR, V23, P84
[4]   The intrinsic electrophysiological characteristics of fly lobula plate tangential cells .1. Passive membrane properties [J].
Borst, A ;
Haag, J .
JOURNAL OF COMPUTATIONAL NEUROSCIENCE, 1996, 3 (04) :313-336
[5]   An on-line archive of reconstructed hippocampal neurons [J].
Cannon, RC ;
Turner, DA ;
Pyapali, GK ;
Wheal, HV .
JOURNAL OF NEUROSCIENCE METHODS, 1998, 84 (1-2) :49-54
[6]  
Capowski J. J., 1976, Computer Graphics, V10, P257, DOI 10.1145/965143.563319
[7]   AN AUTOMATIC NEURON RECONSTRUCTION SYSTEM [J].
CAPOWSKI, JJ .
JOURNAL OF NEUROSCIENCE METHODS, 1983, 8 (04) :353-364
[8]   COMPUTER-AIDED RECONSTRUCTION OF NEURON TREES FROM SEVERAL SERIAL SECTIONS [J].
CAPOWSKI, JJ .
COMPUTERS AND BIOMEDICAL RESEARCH, 1977, 10 (06) :617-629
[9]   ACCURATE COMPUTER RECONSTRUCTION AND GRAPHICS DISPLAY OF COMPLEX NEURONS UTILIZING STATE-OF-THE-ART INTERACTIVE TECHNIQUES [J].
CAPOWSKI, JJ ;
SEDIVEC, MJ .
COMPUTERS AND BIOMEDICAL RESEARCH, 1981, 14 (06) :518-532
[10]  
CAPOWSKI JJ, 1982, ACTA MORPHOL HUNG, V30, P241