共 29 条
Abundance of Common Aerobic Anoxygenic Phototrophic Bacteria in a Coastal Aquaculture Area
被引:12
作者:

Sato-Takabe, Yuki
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机构:
Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan

Nakao, Hironori
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h-index: 0
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Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan

Kataoka, Takafumi
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h-index: 0
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Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan

Yokokawa, Taichi
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h-index: 0
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Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan

Hamasaki, Koji
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h-index: 0
机构:
Univ Tokyo, Atmosphere & Ocean Res Inst, Kashiwa, Chiba, Japan Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan

Ohta, Kohei
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机构:
Ehime Univ, South Ehime Fisheries Res Ctr, Ainan, Ehime, Japan Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan

论文数: 引用数:
h-index:
机构:
机构:
[1] Ehime Univ, Ctr Marine Environm Studies, Matsuyama, Ehime 790, Japan
[2] Univ Tokyo, Atmosphere & Ocean Res Inst, Kashiwa, Chiba, Japan
[3] Ehime Univ, South Ehime Fisheries Res Ctr, Ainan, Ehime, Japan
来源:
FRONTIERS IN MICROBIOLOGY
|
2016年
/
7卷
关键词:
aerobic anoxygenic phototrophic bacteria;
biomass;
phylogeny;
aquaculture;
Uwa Sea;
GRADIENT GEL-ELECTROPHORESIS;
PHOTOHETEROTROPHIC BACTERIA;
MEDITERRANEAN SEA;
PACIFIC-OCEAN;
GROWTH-RATES;
DIVERSITY;
BACTERIOPLANKTON;
POPULATIONS;
DYNAMICS;
ATLANTIC;
D O I:
10.3389/fmicb.2016.01996
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
Aerobic anoxygenic phototrophic bacteria (AAnPB) rely on not only heterotrophic but also phototrophic energy gain. AAnPB are known to have high abundance in oligotrophic waters and are the major portion of the bacterial carbon stock in the environment. In a yearlong study in an aquaculture area in the Uwa Sea, Japan, AAnPB, accounted for 4.7 to 24% of the total bacteria by count. Since the cell volume of AAnPB is 2.23 +/- 0.674 times larger than the mean for total bacteria, AAnPB biomass is estimated to account for 10-53% of the total bacterial assemblage. By examining pufM gene sequence, a common phylogenetic AAnPB species was found in all sampling sites through the year. The common species and other season-specific species were phylogenetically close to unculturable clones recorded in the Sargasso Sea and Pacific Ocean. The present study suggests that the common species may be a cosmopolitan species with worldwide distribution that is abundant not only in the oligotrophic open ocean but also in eutrophic aquaculture areas.
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- [1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs[J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402Altschul, SF论文数: 0 引用数: 0 h-index: 0机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USAMadden, TL论文数: 0 引用数: 0 h-index: 0机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USASchaffer, AA论文数: 0 引用数: 0 h-index: 0机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USAZhang, JH论文数: 0 引用数: 0 h-index: 0机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USAZhang, Z论文数: 0 引用数: 0 h-index: 0机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USAMiller, W论文数: 0 引用数: 0 h-index: 0机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USALipman, DJ论文数: 0 引用数: 0 h-index: 0机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USA
- [2] Responses of aerobic anoxygenic phototrophic bacteria to algal blooms in the East China Sea[J]. HYDROBIOLOGIA, 2011, 661 (01) : 435 - 443Chen, Yao论文数: 0 引用数: 0 h-index: 0机构: Xiamen Univ, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China Xiamen Univ, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R ChinaZhang, Yao论文数: 0 引用数: 0 h-index: 0机构: Xiamen Univ, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China Xiamen Univ, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R ChinaJiao, Nianzhi论文数: 0 引用数: 0 h-index: 0机构: Xiamen Univ, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China Xiamen Univ, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China
- [3] Photoheterotrophic Microbes in the Arctic Ocean in Summer and Winter[J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2009, 75 (15) : 4958 - 4966Cottrell, Matthew T.论文数: 0 引用数: 0 h-index: 0机构: Univ Delaware, Coll Earth Ocean & Environm, Lewes, DE 19958 USA Univ Delaware, Coll Earth Ocean & Environm, Lewes, DE 19958 USAKirchman, David L.论文数: 0 引用数: 0 h-index: 0机构: Univ Delaware, Coll Earth Ocean & Environm, Lewes, DE 19958 USA Univ Delaware, Coll Earth Ocean & Environm, Lewes, DE 19958 USA
- [4] Rapid DNA extraction from ferns for PCR-based analyses[J]. BIOTECHNIQUES, 1999, 27 (01) : 66 - +Dempster, EL论文数: 0 引用数: 0 h-index: 0机构: Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, Wales Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, WalesPryor, KV论文数: 0 引用数: 0 h-index: 0机构: Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, Wales Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, WalesFrancis, D论文数: 0 引用数: 0 h-index: 0机构: Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, Wales Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, WalesYoung, JE论文数: 0 引用数: 0 h-index: 0机构: Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, Wales Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, WalesRogers, HJ论文数: 0 引用数: 0 h-index: 0机构: Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, Wales Cardiff Univ, Sch Biosci, Cardiff CF1 3TL, S Glam, Wales
- [5] Marked seasonality of aerobic anoxygenic phototrophic bacteria in the coastal NW Mediterranean Sea as revealed by cell abundance, pigment concentration and pyrosequencing of pufM gene[J]. ENVIRONMENTAL MICROBIOLOGY, 2014, 16 (09) : 2953 - 2965Ferrera, Isabel论文数: 0 引用数: 0 h-index: 0机构: CSIC, Dept Biol Marina & Oceanog, Inst Ciencies Mar, Barcelona, Catalunya, Spain CSIC, Dept Biol Marina & Oceanog, Inst Ciencies Mar, Barcelona, Catalunya, SpainBorrego, Carles M.论文数: 0 引用数: 0 h-index: 0机构: Univ Girona, Grp Ecol Microbiana Mol, Girona, Catalunya, Spain Inst Catala Recerca Aigua, Girona, Catalunya, Spain CSIC, Dept Biol Marina & Oceanog, Inst Ciencies Mar, Barcelona, Catalunya, SpainSalazar, Guillem论文数: 0 引用数: 0 h-index: 0机构: CSIC, Dept Biol Marina & Oceanog, Inst Ciencies Mar, Barcelona, Catalunya, Spain CSIC, Dept Biol Marina & Oceanog, Inst Ciencies Mar, Barcelona, Catalunya, SpainGasol, Josep M.论文数: 0 引用数: 0 h-index: 0机构: CSIC, Dept Biol Marina & Oceanog, Inst Ciencies Mar, Barcelona, Catalunya, Spain CSIC, Dept Biol Marina & Oceanog, Inst Ciencies Mar, Barcelona, Catalunya, Spain
- [6] Comparison of Growth Rates of Aerobic Anoxygenic Phototrophic Bacteria and Other Bacterioplankton Groups in Coastal Mediterranean Waters[J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (21) : 7451 - 7458Ferrera, Isabel论文数: 0 引用数: 0 h-index: 0机构: CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, Spain CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, SpainGasol, Josep M.论文数: 0 引用数: 0 h-index: 0机构: CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, Spain CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, SpainSebastian, Marta论文数: 0 引用数: 0 h-index: 0机构: CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, Spain CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, SpainHojerova, Eva论文数: 0 引用数: 0 h-index: 0机构: Inst Microbiol CAS, Trebon 37981, Czech Republic Univ S Bohemia, Fac Sci, Ceske Budejovice 37005, Czech Republic CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, SpainKoblizek, Michal论文数: 0 引用数: 0 h-index: 0机构: Inst Microbiol CAS, Trebon 37981, Czech Republic CSIC, Inst Ciencias Mar, Dept Biol Marina & Oceanog, E-08003 Barcelona, Catalunya, Spain
- [7] Periodic intrusion of cold water from the Pacific Ocean into the bottom layer of the Bungo Channel in Japan[J]. JOURNAL OF OCEANOGRAPHY, 2002, 58 (04) : 547 - 556Kaneda, A论文数: 0 引用数: 0 h-index: 0机构: Ehime Univ, Ctr Marine Environm Studies, Bunkyo Ku, Matsuyama, Ehime 7908577, Japan Ehime Univ, Ctr Marine Environm Studies, Bunkyo Ku, Matsuyama, Ehime 7908577, JapanTakeoka, H论文数: 0 引用数: 0 h-index: 0机构: Ehime Univ, Ctr Marine Environm Studies, Bunkyo Ku, Matsuyama, Ehime 7908577, JapanNagaura, E论文数: 0 引用数: 0 h-index: 0机构: Ehime Univ, Ctr Marine Environm Studies, Bunkyo Ku, Matsuyama, Ehime 7908577, JapanKoizumi, Y论文数: 0 引用数: 0 h-index: 0机构: Ehime Univ, Ctr Marine Environm Studies, Bunkyo Ku, Matsuyama, Ehime 7908577, Japan
- [8] Rapid growth rates of aerobic anoxygenic phototrophs in the ocean[J]. ENVIRONMENTAL MICROBIOLOGY, 2007, 9 (10) : 2401 - 2406Koblizek, Michal论文数: 0 引用数: 0 h-index: 0机构: Inst Microbiol CAS, Trebon 37981, Czech Republic Inst Microbiol CAS, Trebon 37981, Czech RepublicMasin, Michal论文数: 0 引用数: 0 h-index: 0机构: Inst Microbiol CAS, Trebon 37981, Czech RepublicRas, Josephine论文数: 0 引用数: 0 h-index: 0机构: Inst Microbiol CAS, Trebon 37981, Czech RepublicPoulton, Alex J.论文数: 0 引用数: 0 h-index: 0机构: Inst Microbiol CAS, Trebon 37981, Czech RepublicPrasil, Ondrej论文数: 0 引用数: 0 h-index: 0机构: Inst Microbiol CAS, Trebon 37981, Czech Republic
- [9] Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean[J]. SCIENCE, 2001, 292 (5526) : 2492 - 2495Kolber, ZS论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USAPlumley, FG论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USALang, AS论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USABeatty, JT论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USABlankenship, RE论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USAVanDover, CL论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USAVetriani, C论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USAKoblizek, M论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USARathgeber, C论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USAFalkowski, PG论文数: 0 引用数: 0 h-index: 0机构: Rutgers State Univ, Inst Marine & Coastal Sci, Environm Biophys & Mol Ecol Program, New Brunswick, NJ 08901 USA
- [10] High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean[J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (13) : 4198 - 4205Lami, Raphael论文数: 0 引用数: 0 h-index: 0机构: Univ Paris 06, Observ Oceanol Banyuls, UMR7621, CNRS,INSU, F-66650 Banyuls Sur Mer, FranceCottrell, Matthew T.论文数: 0 引用数: 0 h-index: 0机构: Univ Paris 06, Observ Oceanol Banyuls, UMR7621, CNRS,INSU, F-66650 Banyuls Sur Mer, FranceRas, Josephine论文数: 0 引用数: 0 h-index: 0机构: Univ Paris 06, Observ Oceanol Banyuls, UMR7621, CNRS,INSU, F-66650 Banyuls Sur Mer, FranceUlloa, Osvaldo论文数: 0 引用数: 0 h-index: 0机构: Univ Paris 06, Observ Oceanol Banyuls, UMR7621, CNRS,INSU, F-66650 Banyuls Sur Mer, FranceObernosterer, Ingrid论文数: 0 引用数: 0 h-index: 0机构: Univ Paris 06, Observ Oceanol Banyuls, UMR7621, CNRS,INSU, F-66650 Banyuls Sur Mer, FranceClaustre, Herve论文数: 0 引用数: 0 h-index: 0机构: Univ Paris 06, Observ Oceanol Banyuls, UMR7621, CNRS,INSU, F-66650 Banyuls Sur Mer, FranceKirchman, David L.论文数: 0 引用数: 0 h-index: 0机构: Univ Paris 06, Observ Oceanol Banyuls, UMR7621, CNRS,INSU, F-66650 Banyuls Sur Mer, FranceLebaron, Philippe论文数: 0 引用数: 0 h-index: 0机构: Univ Paris 06, Observ Oceanol Banyuls, UMR7621, CNRS,INSU, F-66650 Banyuls Sur Mer, France