Comparative transcriptomic analysis reveals the mechanism of leech environmental adaptation

被引:10
作者
Liu, Zichao [1 ]
Zhao, Feng [2 ]
Tong, Xiangrong [1 ]
Liu, Kaiqing [1 ]
Wang, Bin [1 ]
Yang, Lijiang [1 ]
Ning, Tiao [3 ]
Wang, Yanjie [4 ]
Zhao, Fang [2 ]
Wang, Dingkang [3 ]
Wang, Debin [1 ]
机构
[1] Kunming Univ, Kunming Key Lab Hydroecol Restorat Dianchi Lake, Key Lab Special Biol Resource Dev & Utilizat Univ, Dept Biol Sci & Technol, Kunming 650214, Yunnan, Peoples R China
[2] Puer Univ, Inst Comparat Study Tradit Mat Med, Dept Biol & Chem, Key Lab Subtrop Med Edible Resources Dev & Utiliz, Puer 665000, Yunnan, Peoples R China
[3] Kunming Univ, Coll Agr, Kunming 650214, Yunnan, Peoples R China
[4] Chinese Acad Sci, Key Lab Anim Models & Human Dis Mech, Chinese Acad Sci & Yunnan Prov, Kunming Inst Zool, Kunming 650223, Yunnan, Peoples R China
基金
中国国家自然科学基金;
关键词
Leech; Transcriptome; Environmental adaptation; Olfactory transduction; RNA-SEQ; MEDICINAL LEECH; SALIVARY TRANSCRIPTOME; MACROBDELLA-DECORA; DNA; SYSTEM; EXPRESSION; DIVERSITY; PEPTIDES; DATASETS;
D O I
10.1016/j.gene.2018.04.063
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The medicinal leeches have been widely utilized in medical procedures for thousands of years. Recently, there were more and more transcriptomes of leech published online including the medicinal leech (Hirudo medicinalis) and some other leeches. However, leech's genetic backgrounds are still largely unknown. In this report, transcriptomes of three phylogenetically close leeches (Poecilobdella javanica, Whitmania pigra, and Haemadipsa cavatuses) were established by RNA-seq technique for studying their genetic mechanisms of environmental adaption. Over 110 million high-quality reads were generated and assembled into unique transcriptom (reads = 200 bp). 27,138 out of de novo assembled transcripts (41.77%) were assigned to one or more GO terms. Additionally, the transcripts were detected in 217 predicted KEGG pathways. The enriched genes were involved in protein metabolism, GPCRs and pathogen-resistant pathways. The results showed that the great variations existed in gene expression of olfactory transduction pathway among three leech species. The comparisons of leech species hinted at the underlying mechanism of leeches adapting well in various environments. Our study will provide useful rationales for future studies of leeches and other annelid species.
引用
收藏
页码:70 / 77
页数:8
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