A Peripheral Blood DNA Methylation Signature of Hepatic Fat Reveals a Potential Causal Pathway for Nonalcoholic Fatty Liver Disease

被引:43
作者
Ma, Jiantao [1 ,2 ,3 ]
Nano, Jana [4 ,5 ,6 ]
Ding, Jingzhong [7 ]
Zheng, Yinan [8 ]
Hennein, Rachel [1 ,2 ]
Liu, Chunyu [1 ,2 ,9 ]
Speliotes, Elizabeth K. [10 ]
Huan, Tianxiao [1 ,2 ]
Song, Ci [1 ,2 ,11 ]
Mendelson, Michael M. [1 ,2 ,12 ]
Joehanes, Roby [1 ,2 ]
Long, Michelle T. [13 ]
Liang, Liming [14 ,15 ]
Smith, Jennifer A. [16 ]
Reynolds, Lindsay M. [7 ]
Ghanbari, Mohsen [4 ,17 ]
Muka, Taulant [4 ]
van Meurs, Joyce B. J. [4 ,18 ]
Alferink, Louise J. M. [19 ]
Franco, Oscar H. [4 ]
Dehghan, Abbas [4 ,20 ]
Ratliff, Scott [16 ]
Zhao, Wei [16 ]
Bielak, Lawrence [16 ]
Kardia, Sharon L. R. [16 ]
Peyser, Patricia A. [16 ]
Ning, Hongyan [8 ]
VanWagner, Lisa B. [8 ,21 ]
Lloyd-Jones, Donald M. [8 ]
Carr, John Jeffrey [22 ]
Greenland, Philip [8 ]
Lichtenstein, Alice H. [23 ]
Hu, Frank B. [24 ]
Liu, Yongmei [7 ]
Hou, Lifang [8 ]
Murad, Sarwa Darwish [19 ]
Levy, Daniel [1 ,2 ]
机构
[1] NHLBI, Populat Sci Branch, NIH, Bldg 10, Bethesda, MD 20892 USA
[2] Framingham Heart Dis Epidemiol Study, Framingham, MA 01702 USA
[3] Tufts Univ, Nutr Data Sci, Friedman Sch Nutr Sci & Policy, Boston, MA 02111 USA
[4] Erasmus MC, Dept Epidemiol, Rotterdam, Netherlands
[5] Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth, Inst Epidemiol, Neuherberg, Germany
[6] German Ctr Diabet Res, Munich, Germany
[7] Wake Forest Sch Med, Dept Epidemiol & Prevent, Winston Salem, NC USA
[8] Northwestern Univ, Dept Prevent Med, Feinberg Sch Med, Chicago, IL 60611 USA
[9] Boston Univ, Dept Biostat, Boston, MA 02215 USA
[10] Univ Michigan, Sch Med, Ann Arbor, MI USA
[11] Uppsala Univ, Mol Epidemiol, Dept Med Sci, Uppsala, Sweden
[12] Harvard Med Sch, Dept Cardiol, Boston Childrens Hosp, Boston, MA 02115 USA
[13] Boston Univ, Sch Med, Dept Med, Gastroenterol Sect, Boston, MA 02118 USA
[14] Harvard TH Chan Sch Publ Hlth, Dept Epidemiol, Boston, MA USA
[15] Harvard TH Chan Sch Publ Hlth, Dept Biostat, Boston, MA USA
[16] Univ Michigan, Sch Publ Hlth, Dept Epidemiol, Ann Arbor, MI 48109 USA
[17] Mashhad Univ Med Sci, Sch Med, Dept Genet, Mashhad, Razavi Khorasan, Iran
[18] Erasmus MC, Dept Internal Med, Rotterdam, Netherlands
[19] Erasmus MC, Dept Gastroenterol & Hepatol, Rotterdam, Netherlands
[20] Imperial Coll London, Dept Biostat & Epidemiol, MRC PHE Ctr Environm & Hlth, Sch Publ Hlth, London, England
[21] Northwestern Univ, Dept Med, Feinberg Sch Med, Div Gastroenterol & Hepatol, Chicago, IL 60611 USA
[22] Vanderbilt Univ, Med Ctr, Dept Radiol & Radiol Sci, Nashville, TN 37232 USA
[23] Tufts Univ, USDA, Human Nutr Res Ctr Aging, Cardiovasc Nutr Lab, Boston, MA 02111 USA
[24] Harvard TH Chan Sch Publ Hlth, Dept Nutr, Boston, MA USA
基金
美国国家卫生研究院;
关键词
EPIGENOME-WIDE ASSOCIATION; CARDIOVASCULAR-DISEASE; DIABETES-MELLITUS; STEATOHEPATITIS;
D O I
10.2337/DB18-1193
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Nonalcoholic fatty liver disease (NAFLD) is a risk factor for type 2 diabetes (T2D). We aimed to identify the peripheral blood DNA methylation signature of hepatic fat. We conducted epigenome-wide association studies of hepatic fat in 3,400 European ancestry (EA) participants and in 401 Hispanic ancestry and 724 African ancestry participants from four population-based cohort studies. Hepatic fat was measured using computed tomography or ultrasound imaging and DNA methylation was assessed at >400,000 cytosine-guanine dinucleotides (CpGs) in whole blood or CD14+ monocytes using a commercial array. We identified 22 CpGs associated with hepatic fat in EA participants at a false discovery rate <0.05 (corresponding P = 6.9 x 10(-6)) with replication at Bonferroni-corrected P < 8.6 x 10(-4). Mendelian randomization analyses supported the association of hypomethylation of cg08309687 (LINC00649) with NAFLD (P = 2.5 x 10(-4)). Hypomethylation of the same CpG was also associated with risk for new-onset T2D (P = 0.005). Our study demonstrates that a peripheral blood-derived DNA methylation signature is robustly associated with hepatic fat accumulation. The hepatic fat-associated CpGs may represent attractive biomarkers for T2D. Future studies are warranted to explore mechanisms and to examine DNA methylation signatures of NAFLD across racial/ethnic groups.
引用
收藏
页码:1073 / 1083
页数:11
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