In vitro Reconstitution of the S. aureus 30S Ribosomal Subunit and RbfA Factor Complex for Structural Studies

被引:4
作者
Bikmullin, A. G. [1 ]
Nurullina, L. I. [1 ]
Garaeva, N. S. [1 ]
Klochkova, E. A. [1 ]
Blokhin, D. S. [1 ]
Golubev, A. A. [1 ,2 ]
Validov, Sh. Z. [1 ]
Khusainov, I. Sh. [1 ,2 ,3 ]
Usachev, K. S. [1 ]
Yusupov, M. M. [1 ,2 ]
机构
[1] Kazan Fed Univ, Kazan 420008, Russia
[2] Inst Genet & Mol & Cellular Biol IGBMC, F-67400 Illkirch Graffenstaden, France
[3] Max Planck Inst Biophys, D-60438 Frankfurt, Germany
基金
俄罗斯基础研究基金会;
关键词
Staphylococcus aureus; ribosome; cryo-electron microscopy; RbfA; translation factor; 30S subunit assembly; CRYOELECTRON MICROSCOPY;
D O I
10.1134/S000629792005003X
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ribosome-binding factor A (RbfA) from Staphylococcus aureus is a cold adaptation protein that is required for the growth of pathogenic cells at low temperatures (10-15 degrees C). RbfA is involved in the processing of 16S rRNA, as well as in the assembly and stabilization of the small 30S ribosomal subunit. Structural studies of the 30S-RbfA complex will help to better understand their interaction, the mechanism of such complexes, and the fundamental process such as 30S subunit assembly that determines and controls the overall level of protein biosynthesis. This article describes protocols for preparation of RbfA and the small 30S ribosomal subunits and reconstitution and optimization of the 30S-RbfA complex to obtain samples suitable for cryo-electron microscopy studies.
引用
收藏
页码:545 / 552
页数:8
相关论文
共 27 条
[1]  
Ayupov RK, 2016, INT J PHARM TECHNOL, V8, P14392
[2]   Cryo-Electron Microscopy and the Amazing Race to Atomic Resolution [J].
Binshtein, Elad ;
Ohi, Melanie D. .
BIOCHEMISTRY, 2015, 54 (20) :3133-3141
[3]   Backbone and side chain NMR assignments for the ribosome binding factor A (RbfA) from Staphylococcus aureus [J].
Blokhin, Dmitriy S. ;
Bikmullin, Aydar G. ;
Nurullina, Liliya I. ;
Garaeva, Natalia S. ;
Validov, Shamil Z. ;
Klochkov, Vladimir V. ;
Aganov, Albert V. ;
Khusainov, Iskander Sh. ;
Yusupov, Marat M. ;
Usachev, Konstantin S. .
BIOMOLECULAR NMR ASSIGNMENTS, 2019, 13 (01) :27-30
[4]   A Primer to Single-Particle Cryo-Electron Microscopy [J].
Cheng, Yifan ;
Grigorieff, Nikolaus ;
Penczek, Pawel A. ;
Walz, Thomas .
CELL, 2015, 161 (03) :438-449
[5]   MRSA and the environment: implications for comprehensive control measures [J].
Cimolai, N. .
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES, 2008, 27 (07) :481-493
[6]   Structural aspects of RbfA action during small ribosomal subunit [J].
Datta, Partha P. ;
Wilson, Daniel N. ;
Kawazoe, Masahito ;
Swami, Neil K. ;
Kaminishi, Tatsuya ;
Sharma, Manjuli R. ;
Booth, Timothy M. ;
Takemoto, Chie ;
Fucini, Paola ;
Yokoyama, Shigeyuki ;
Agrawal, Rajendra K. .
MOLECULAR CELL, 2007, 28 (03) :434-445
[7]  
Guo F, 2014, METHODS MOL BIOL, V1117, P401, DOI 10.1007/978-1-62703-776-1_19
[8]   Solution NMR structure of ribosome-binding factor A (RbfA), a cold-shock adaptation protein from Escherichia coli [J].
Huang, YPJ ;
Swapna, GVT ;
Rajan, PK ;
Ke, HP ;
Xia, B ;
Shukla, K ;
Inouye, M ;
Montelione, GT .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 327 (02) :521-536
[9]   Ribosome biogenesis and the translation process in Eschetichia coli [J].
Kaczanowska, Magdalena ;
Ryden-Aulin, Monica .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2007, 71 (03) :477-+
[10]   Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF [J].
Khusainov, Iskander ;
Vicens, Quentin ;
Ayupov, Rustam ;
Usachev, Konstantin ;
Myasnikov, Alexander ;
Simonetti, Angelita ;
Validov, Shamil ;
Kieffer, Bruno ;
Yusupova, Gulnara ;
Yusupov, Marat ;
Hashem, Yaser .
EMBO JOURNAL, 2017, 36 (14) :2073-2087