Cooperative DNA Probing Using a β-Cyclodextrin-DNA Conjugate and a Nucleobase-Specific Fluorescent Ligand

被引:66
作者
Ihara, Toshihiro [1 ,3 ]
Uemura, Asuka [1 ]
Futamura, Akika [1 ]
Shimizu, Masamichi [1 ]
Baba, Noriyuki [2 ]
Nishizawa, Seiichi [2 ,4 ]
Teramae, Norio [2 ,4 ]
Jyo, Akinori [1 ]
机构
[1] Kumamoto Univ, Dept Appl Chem & Biochem, Grad Sch Sci & Technol, Kumamoto 8608555, Japan
[2] Tohoku Univ, Dept Chem, Grad Sch Sci, Aoba Ku, Sendai, Miyagi 9808578, Japan
[3] Japan Sci & Technol Agcy, PRESTO, Chiyoda Ku, Kawaguchi, Saitama 3320012, Japan
[4] Japan Sci & Technol Agcy, CREST, Chiyoda Ku, Kawaguchi, Saitama 3320012, Japan
关键词
ABASIC SITE; RECOGNITION; PROBES;
D O I
10.1021/ja809023n
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A single nucleotide potymorphism (SNP) base on the target is displayed at a gap in a ternary duplex carrying B-cyclodextrin-modified DNA. A stable tandem duplex forms regardless of the type of SNP base. A nucleobase-specific ligand is then added to this system. The dansyl moiety in the ligand is expected to form a luminous inclusion complex with nearby B-CyD, only when the ligand recognizes the specific base displayed in the gap.
引用
收藏
页码:1386 / +
页数:4
相关论文
共 15 条
[1]  
AGRAWAL S, 1993, PROTOCOLS OLIGONUCLE, P6804
[2]   Self-association without regard to prototropy. A heterocycle that forms extremely stable quadruply hydrogen-bonded dimers [J].
Corbin, PS ;
Zimmerman, SC .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (37) :9710-9711
[3]   Gene sensor using ferrocenyl oligonucleotide [J].
Ihara, T ;
Nakayama, M ;
Murata, M ;
Nakano, K ;
Maeda, M .
CHEMICAL COMMUNICATIONS, 1997, (17) :1609-1610
[4]   Photochemical ligation of DNA conjugates through anthracene cyclodimer formation and its fidelity to the template sequences [J].
Ihara, T ;
Fujii, T ;
Mukae, M ;
Kitamura, Y ;
Jyo, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (29) :8880-8881
[5]   BISUBSTRATE REACTION TEMPLATES - EXAMINATION OF THE CONSEQUENCES OF IDENTICAL VERSUS DIFFERENT BINDING-SITES [J].
KELLY, TR ;
BRIDGER, GJ ;
ZHAO, C .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1990, 112 (22) :8024-8034
[6]   Asymmetric cooperativity in tandem hybridization of enantiomeric metal complex-tethered short fluorescent DNA probes [J].
Kitamura, Y ;
Ihara, T ;
Okada, K ;
Tsujimura, Y ;
Shirasaka, Y ;
Tazaki, M ;
Jyo, A .
CHEMICAL COMMUNICATIONS, 2005, (36) :4523-4525
[7]   Template-directed formation of luminescent lanthanide complexes: Versatile tools for colorimetric identification of single nucleotide polymorphism [J].
Kitamura, Yusuke ;
Ihara, Toshihiro ;
Tsujimura, Yusuke ;
Osawa, Yuka ;
Sasahara, Daisuke ;
Yamamoto, Mayumi ;
Okada, Kenji ;
Tazaki, Masato ;
Jyo, Akinori .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2008, 102 (10) :1921-1931
[8]   Nanocrystal-based bioelectronic coding of single nucleotide polymorphisms [J].
Liu, GD ;
Lee, TMH ;
Wang, JS .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (01) :38-39
[9]   Scanning of guanine-guanine mismatches in DNA by synthetic ligands using surface plasmon resonance [J].
Nakatani, K ;
Sando, S ;
Saito, I .
NATURE BIOTECHNOLOGY, 2001, 19 (01) :51-55
[10]   Recognition of a single guanine bulge by 2-acylamino-1,8-naphthyridine [J].
Nakatani, K ;
Sando, S ;
Saito, I .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (10) :2172-2177