共 81 条
Poxviruses: past, present and future
被引:154
作者:

Lefkowitz, EJ
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机构: Univ Victoria, Dept Biochem & Microbiol, Victoria, BC V8P 5C2, Canada

Wang, C
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机构: Univ Victoria, Dept Biochem & Microbiol, Victoria, BC V8P 5C2, Canada

Upton, C
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机构: Univ Victoria, Dept Biochem & Microbiol, Victoria, BC V8P 5C2, Canada
机构:
[1] Univ Victoria, Dept Biochem & Microbiol, Victoria, BC V8P 5C2, Canada
[2] Univ Alabama Birmingham, Dept Microbiol, Birmingham, AL 35294 USA
关键词:
poxvirus;
vaccinia;
phylogeny;
comparative genomics;
bioinformatics;
D O I:
10.1016/j.virusres.2006.01.016
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
The analysis of poxvirus genomes is complex, in part, because of their size (130-360 kb) and the fact that gene content is variable; a common set of 49 genes has been found in all sequenced poxviruses and an additional 41 genes are also present in all sequenced orthopox viruses. As a group, poxviruses have a very broad range of eukaryotic hosts (including mammals, birds, reptiles and insects) and many poxvirus genes are associated with blocking host anti-viral responses. One consequence of this is that many poxvirus genes are not essential for growth in tissue culture and that extensive passaging in vitro results in the accumulation of mutations, including deletions that result in loss of gene function. Here, we review various comparative analyses of the poxviruses including gene prediction, gene conservation and function, genome organization, and poxvirus taxonomy and evolution. (c) 2006 Elsevier B.V. All rights reserved.
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页码:105 / 118
页数:14
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共 81 条
[1]
The genome of fowlpox virus
[J].
Afonso, CL
;
Tulman, ER
;
Lu, Z
;
Zsak, L
;
Kutish, GF
;
Rock, DL
.
JOURNAL OF VIROLOGY,
2000, 74 (08)
:3815-3831

Afonso, CL
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Tulman, ER
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Lu, Z
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Zsak, L
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Kutish, GF
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Rock, DL
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA
[2]
The genome of Melanoplus sanguinipes Entomopoxvirus
[J].
Afonso, CL
;
Tulman, ER
;
Lu, Z
;
Oma, E
;
Kutish, GF
;
Rock, DL
.
JOURNAL OF VIROLOGY,
1999, 73 (01)
:533-552

Afonso, CL
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Tulman, ER
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Lu, Z
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Oma, E
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Kutish, GF
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Rock, DL
论文数: 0 引用数: 0
h-index: 0
机构:
USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA
[3]
The genome of camelpox virus
[J].
Afonso, CL
;
Tulman, ER
;
Lu, Z
;
Zsak, L
;
Sandybaev, NT
;
Kerembekova, UZ
;
Zaitsev, VL
;
Kutish, GF
;
Rock, DL
.
VIROLOGY,
2002, 295 (01)
:1-9

Afonso, CL
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Tulman, ER
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Lu, Z
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Zsak, L
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Sandybaev, NT
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Kerembekova, UZ
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Zaitsev, VL
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Kutish, GF
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Rock, DL
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA
[4]
The genome of Swinepox virus
[J].
Afonso, CL
;
Tulman, ER
;
Lu, Z
;
Zsak, L
;
Osorio, FA
;
Balinsky, C
;
Kutish, GF
;
Rock, DL
.
JOURNAL OF VIROLOGY,
2002, 76 (02)
:783-790

Afonso, CL
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Tulman, ER
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Lu, Z
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Zsak, L
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Osorio, FA
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Balinsky, C
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Kutish, GF
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA

Rock, DL
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Plum Isl Anim Dis Ctr, Greenport, NY 11944 USA
[5]
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
[J].
Altschul, SF
;
Madden, TL
;
Schaffer, AA
;
Zhang, JH
;
Zhang, Z
;
Miller, W
;
Lipman, DJ
.
NUCLEIC ACIDS RESEARCH,
1997, 25 (17)
:3389-3402

Altschul, SF
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USA

Madden, TL
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USA

Schaffer, AA
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USA

Zhang, JH
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USA

Zhang, Z
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USA

Miller, W
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USA

Lipman, DJ
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, LAB GENET DIS RES, NIH, BETHESDA, MD 20892 USA
[6]
Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA
[J].
Anderson, FE
;
Swofford, DL
.
MOLECULAR PHYLOGENETICS AND EVOLUTION,
2004, 33 (02)
:440-451

Anderson, FE
论文数: 0 引用数: 0
h-index: 0
机构:
So Illinois Univ, Dept Zool, Carbondale, IL 62901 USA So Illinois Univ, Dept Zool, Carbondale, IL 62901 USA

Swofford, DL
论文数: 0 引用数: 0
h-index: 0
机构: So Illinois Univ, Dept Zool, Carbondale, IL 62901 USA
[7]
The complete genomic sequence of the modified vaccinia Ankara strain: Comparison with other orthopoxviruses
[J].
Antoine, G
;
Scheiflinger, F
;
Dorner, F
;
Falkner, FG
.
VIROLOGY,
1998, 244 (02)
:365-396

Antoine, G
论文数: 0 引用数: 0
h-index: 0
机构:
Hyland Immuno, Ctr Biomed Res, A-2304 Orth, Donau, Austria Hyland Immuno, Ctr Biomed Res, A-2304 Orth, Donau, Austria

Scheiflinger, F
论文数: 0 引用数: 0
h-index: 0
机构:
Hyland Immuno, Ctr Biomed Res, A-2304 Orth, Donau, Austria Hyland Immuno, Ctr Biomed Res, A-2304 Orth, Donau, Austria

Dorner, F
论文数: 0 引用数: 0
h-index: 0
机构:
Hyland Immuno, Ctr Biomed Res, A-2304 Orth, Donau, Austria Hyland Immuno, Ctr Biomed Res, A-2304 Orth, Donau, Austria

Falkner, FG
论文数: 0 引用数: 0
h-index: 0
机构:
Hyland Immuno, Ctr Biomed Res, A-2304 Orth, Donau, Austria Hyland Immuno, Ctr Biomed Res, A-2304 Orth, Donau, Austria
[8]
CHARACTERIZATION AND TEMPORAL REGULATION OF MESSENGER-RNAS ENCODED BY VACCINIA VIRUS INTERMEDIATE-STAGE GENES
[J].
BALDICK, CJ
;
MOSS, B
.
JOURNAL OF VIROLOGY,
1993, 67 (06)
:3515-3527

BALDICK, CJ
论文数: 0 引用数: 0
h-index: 0
机构:
NIAID,VIRAL DIS LAB,BETHESDA,MD 20892 NIAID,VIRAL DIS LAB,BETHESDA,MD 20892

MOSS, B
论文数: 0 引用数: 0
h-index: 0
机构:
NIAID,VIRAL DIS LAB,BETHESDA,MD 20892 NIAID,VIRAL DIS LAB,BETHESDA,MD 20892
[9]
FIDELITY OF HOMOLOGOUS RECOMBINATION IN VACCINIA VIRUS-DNA
[J].
BALL, LA
.
VIROLOGY,
1995, 209 (02)
:688-691

BALL, LA
论文数: 0 引用数: 0
h-index: 0
机构: Microbiology Department, University of Alabama at Birmingham, Birmingham
[10]
Do viruses form lineages across different domains of life?
[J].
Bamford, DH
.
RESEARCH IN MICROBIOLOGY,
2003, 154 (04)
:231-236

Bamford, DH
论文数: 0 引用数: 0
h-index: 0
机构: Univ Helsinki, Dept Biosci, FIN-00014 Helsinki, Finland