Genome-wide analysis of zinc finger-homeodomain (ZF-HD) transcription factors in diploid and tetraploid cotton

被引：9

作者：

Xing, Linxue ^{[1
]}

Peng, Ke ^{[2
]}

Xue, Shuang ^{[1
]}

Yuan, Wenfei ^{[1
]}

Zhu, Baoqi ^{[1
]}

Zhao, Pengju ^{[1
]}

Wu, Hongli ^{[1
]}

Cheng, Yaxin ^{[1
]}

Fang, Mengna ^{[1
]}

Liu, Zhen ^{[1
]}

机构：

[1] Anyang Inst Technol, Sch Biotechnol & Food Sci, Anyang Key Lab Bioinformat, Anyang 455000, Henan, Peoples R China

[2] Univ Southampton, Southampton Business Sch, Southampton SO17 1BJ, Hants, England

来源：

FUNCTIONAL & INTEGRATIVE GENOMICS | 2022年 / 22卷 / 06期

关键词：

Cotton; ZF-HD; Duplication; Evolution; Expression; EXPRESSION ANALYSIS; GENE; CLASSIFICATION; IDENTIFICATION; ARABIDOPSIS; DIVERGENCE; EVOLUTION; HOMEOBOX; PROTEINS; TOOLKIT;

D O I：

10.1007/s10142-022-00913-0

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

ZF-HD (zinc finger-homeodomain) gene family plays important roles in plant growth, development, and various stress responses. In the present study, 49, 50, 22, and 32 ZF-HD genes were identified in Gossypium hirsutum, Gossypium barbadense, Gossypium arboretum, and Gossypium raimondii genomes, respectively. According to their phylogenetic features, the ZF-HD genes were classified into six groups. Segmental duplication, whole genome duplication, and transposable elements provides major forces for the expansion of cotton ZF-HD gene family during the divergence of Gossypium species and the divergence between monocots and dicots. The Ka/Ks ratios of the ZF-HD segmental duplication pairs were mainly distributed around 0.12, which indicated that they have experienced strong purifying selective pressure during evolution. Transcriptome analysis showed that 6 Gossypium hirsutum and 4 Gossypium barbadense ZF-HD genes were expressed in all tested tissues. Further, expression profiles under abiotic stress exhibited that the ZF-HD genes were differentially regulated in response to various stresses. Taken together, our findings provide a valuable information on the characterization of ZF-HD gene family and lay foundation for their further function investigations in cotton.

引用

页码：1269 / 1281

页数：13

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