Peculiarities of the Binding of Some Small Ligands to DNA

被引:6
作者
Gumenyuk, V. [1 ]
Kutovyy, S. [1 ]
Sych, T. [1 ]
Savchuk, R. [1 ]
Bashmakova, N. [1 ]
机构
[1] Taras Shevchenko Natl Univ Kyiv, UA-01601 Kiev, Ukraine
关键词
DNA; ligand; binding equations; intercalation; external binding; ETHIDIUM-BROMIDE; ACRIDINE-ORANGE; PROTOBERBERINE; ALKALOIDS;
D O I
10.1080/15421406.2013.872856
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The comparative study of the interaction of ethidium bromide, acridine orange, and isoquinoline alkaloids such as sanguinarine and berberine with DNA in aqueous solutions using the optical spectroscopy methods is presented. The dependences of the spectral characteristics of ligands on the concentration ratio P/D between the DNA base pairs and ligands molecules in solutions are considered. The character of binding is found to depend on P/D. The parameters of the binding with DNA are determined for the external binding and the intercalation, by using the modified Scatchard and McGhee-von Hippel equations. The influence of a ligand form on binding ways is shown.
引用
收藏
页码:242 / 250
页数:9
相关论文
共 13 条
  • [1] INTERACTION OF PLANT ALKALOIDS WITH DNA .2. BERBERINIUM CHLORIDE
    DAVIDSON, MW
    LOPP, I
    ALEXANDER, S
    WILSON, WD
    [J]. NUCLEIC ACIDS RESEARCH, 1977, 4 (08) : 2697 - 2712
  • [2] STUDY OF INTERACTION OF DNA AND ACRIDINE-ORANGE BY VARIOUS OPTICAL METHODS
    FREDERICQ, E
    HOUSSIER, C
    [J]. BIOPOLYMERS, 1972, 11 (11) : 2281 - 2308
  • [3] Quaternary protoberberine alkaloids
    Grycova, Lenka
    Dostal, Jiri
    Marek, Radek
    [J]. PHYTOCHEMISTRY, 2007, 68 (02) : 150 - 175
  • [4] Gumenyuk VG, 2011, UKR J PHYS, V56, P524
  • [5] INTERACTION OF ETHIDIUM-BROMIDE WITH DNA - OPTICAL AND ELECTROOPTICAL STUDY
    HOUSSIER, C
    HARDY, B
    FREDERICQ, E
    [J]. BIOPOLYMERS, 1974, 13 (06) : 1141 - 1160
  • [6] Influence of DNA structures on the conversion of sanguinarine alkanolamine form to iminium form
    Maiti, M
    Das, S
    Sen, A
    Das, A
    Kumar, GS
    Nandi, R
    [J]. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2002, 20 (03) : 455 - 464
  • [7] Molecular aspects on the interaction of protoberberine, benzophenanthridine, and aristolochia group of alkaloids with nucleic acid structures and biological perspectives
    Maiti, Motilal
    Kumar, Gopinatba Suresb
    [J]. MEDICINAL RESEARCH REVIEWS, 2007, 27 (05) : 649 - 695
  • [8] Polymorphic Nucleic Acid Binding of Bioactive Isoquinoline Alkaloids and Their Role in Cancer
    Maiti, Motilal
    Kumar, Gopinatha Suresh
    [J]. JOURNAL OF NUCLEIC ACIDS, 2010, 2010
  • [9] THEORETICAL ASPECTS OF DNA-PROTEIN INTERACTIONS - COOPERATIVE AND NON-COOPERATIVE BINDING OF LARGE LIGANDS TO A ONE-DIMENSIONAL HOMOGENEOUS LATTICE
    MCGHEE, JD
    HIPPEL, PHV
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1974, 86 (02) : 469 - 489
  • [10] Motulsky H., GRAPHPAD GUIDE ANAL