Second update of the International Registry of HLA Epitopes. I. The HLA-ABC Epitope Database

被引:28
作者
Duquesnoy, R. J. [1 ]
Marrari, M. [1 ]
Marroquim, M. S. [2 ]
Borges, A. G. [2 ]
da Mata Sousa, L. C. D. [2 ]
Socorro, A. [2 ]
do Monte, S. J. H. [3 ]
机构
[1] Univ Pittsburgh, Med Ctr, Thomas E Starzl Transplantat Inst, Pittsburgh, PA 15260 USA
[2] Univ Fed Piaui, Dept Informat & Stat, Teresina, Brazil
[3] Univ Fed Piaui, Immunogenet & Mol Biol Lab, Teresina, Brazil
关键词
PREDICTION; ANTIBODIES; WEBSITE;
D O I
10.1016/j.humimm.2018.11.007
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The International Registry of HLA Epitopes (http://www.epregistry.com.br) is a website-based resource for HLA epitopes important in transplant rejection and platelet transfusion refractoriness. Its primary goal is to document epitopes that are verified experimentally with specific antibodies. Such epitopes can be defined by single eplets and by eplets paired with certain polymorphic residues within a 15-A radius, the dimension of the corresponding structural epitope. This report is an update of the HLA-ABC repertoire including descriptions of 72 antibody-verifications of epitopes defined by eplets and/or eplet pairs. The newly updated version 2.0 EpRegistry shows also the polymorphic residue compositions of structural epitopes corresponding to eplets shared between groups of alleles. At present, 151 eplets have not been antibody-verified, and we ranked them with a so-called ElliPro score as a potential predictor of immunogenicity. Sixty eplets with low ElliPro scores might be considered non-epitopes incapable of inducing specific antibodies.
引用
收藏
页码:103 / 106
页数:4
相关论文
共 17 条
  • [1] Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
    Andersen, Pernille Haste
    Nielsen, Morten
    Lund, Ole
    [J]. PROTEIN SCIENCE, 2006, 15 (11) : 2558 - 2567
  • [2] Cauquil B., 2018, HLA IMMUNE RESPONSE
  • [3] Update of the HLA class I eplet database in the website based registry of antibody-defined HLA epitopes
    Duquesnoy, R. J.
    [J]. TISSUE ANTIGENS, 2014, 83 (06): : 382 - 390
  • [4] 16th IHIW: A Website for Antibody-Defined HLA Epitope Registry
    Duquesnoy, R. J.
    Marrari, M.
    Sousa, L. C. D. da M.
    Barroso, J. R. P. de M.
    Aita, K. M. de S. U.
    da Silva, A. S.
    do Monte, S. J. H.
    [J]. INTERNATIONAL JOURNAL OF IMMUNOGENETICS, 2013, 40 (01) : 54 - 59
  • [5] Duquesnoy R. J., 2016, INT J IMMUNOGENET, P1
  • [6] A structurally based approach to determine HLA compatibility at the humoral immune level
    Duquesnoy, Rene J.
    [J]. HUMAN IMMUNOLOGY, 2006, 67 (11) : 847 - 862
  • [7] Usefulness of the ElliPro epitope predictor program in defining the repertoire of HLA-ABC eplets
    Duquesnoy, Rene J.
    Marrari, Marilyn
    [J]. HUMAN IMMUNOLOGY, 2017, 78 (7-8) : 481 - 488
  • [8] HLA Epitopes: The Targets of Monoclonal and Alloantibodies Defined
    El-Awar, Nadim
    Jucaud, Vadim
    Anh Nguyen
    [J]. JOURNAL OF IMMUNOLOGY RESEARCH, 2017, 2017
  • [9] El-Manzalawy Yasser, 2010, Immunome Res, V6 Suppl 2, pS2, DOI 10.1186/1745-7580-6-S2-S2
  • [10] Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools
    Greenbaum, Jason A.
    Andersen, Pernille Haste
    Blythe, Martin
    Bui, Huynh-Hoa
    Cachau, Raul E.
    Crowe, James
    Davies, Matthew
    Kolaskar, A. S.
    Lund, Ole
    Morrison, Sherrie
    Mumey, Brendan
    Ofran, Yanay
    Pellequer, Jean-Luc
    Pinilla, Clemencia
    Ponomarenko, Julia V.
    Raghava, G. P. S.
    van Regenmortel, Marc H. V.
    Roggen, Erwin L.
    Sette, Alessandro
    Schlessinger, Avner
    Sollner, Johannes
    Zand, Martin
    Peters, Bjoern
    [J]. JOURNAL OF MOLECULAR RECOGNITION, 2007, 20 (02) : 75 - 82