A Genome-Wide Analysis of Populations from European Russia Reveals a New Pole of Genetic Diversity in Northern Europe

被引:28
作者
Khrunin, Andrey V. [1 ]
Khokhrin, Denis V. [1 ]
Filippova, Irina N. [1 ]
Esko, Tonu [2 ,3 ,4 ]
Nelis, Mari [2 ,4 ,5 ]
Bebyakova, Natalia A. [6 ]
Bolotova, Natalia L. [7 ]
Klovins, Janis [8 ]
Nikitina-Zake, Liene [8 ]
Rehnstrom, Karola [9 ,10 ]
Ripatti, Samuli [9 ,10 ]
Schreiber, Stefan [11 ]
Franke, Andre [12 ]
Macek, Milan [13 ,14 ]
Krulisova, Veronika [13 ,14 ]
Lubinski, Jan [15 ]
Metspalu, Andres [2 ,3 ,4 ]
Limborska, Svetlana A. [1 ]
机构
[1] Russian Acad Sci, Inst Mol Genet, Dept Mol Bases Human Genet, Moscow 123182, Russia
[2] Univ Tartu, Estonian Genome Ctr, EE-50090 Tartu, Estonia
[3] Univ Tartu, Inst Mol & Cell Biol, Dept Biotechnol, EE-50090 Tartu, Estonia
[4] Estonian Bioctr, Tartu, Estonia
[5] Univ Geneva, Sch Med, Dept Genet Med & Dev, CH-1211 Geneva, Switzerland
[6] Northern State Med Univ, Deparment Med Biol & Genet, Arkhangelsk, Russia
[7] Vologda State Pedag Univ, Deparment Ecol & Zool, Vologda, Russia
[8] Latvian Biomed Res & Study Ctr, Riga, Latvia
[9] Univ Helsinki, Inst Mol Med Finland, Helsinki, Finland
[10] Wellcome Trust Sanger Institiute, Hinxton, England
[11] Univ Kiel, Dept Internal Med 1, Popgen Biobank, Kiel, Germany
[12] Univ Kiel, Inst Clin Mol Biol, Kiel, Germany
[13] Univ Hosp Motol, Dept Biol & Med Genet, Prague, Czech Republic
[14] Charles Univ Prague, Sch Med 2, Prague, Czech Republic
[15] Pomeranian Med Univ, Szczecin, Poland
关键词
DIFFERENTIATION; HOMOZYGOSITY; PATTERNS; RUNS; POLYMORPHISMS; ASSOCIATION; ANCESTRY; LOCUS;
D O I
10.1371/journal.pone.0058552
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Several studies examined the fine-scale structure of human genetic variation in Europe. However, the European sets analyzed represent mainly northern, western, central, and southern Europe. Here, we report an analysis of approximately 166,000 single nucleotide polymorphisms in populations from eastern (northeastern) Europe: four Russian populations from European Russia, and three populations from the northernmost Finno-Ugric ethnicities (Veps and two contrast groups of Komi people). These were compared with several reference European samples, including Finns, Estonians, Latvians, Poles, Czechs, Germans, and Italians. The results obtained demonstrated genetic heterogeneity of populations living in the region studied. Russians from the central part of European Russia (Tver, Murom, and Kursk) exhibited similarities with populations from central-eastern Europe, and were distant from Russian sample from the northern Russia (Mezen district, Archangelsk region). Komi samples, especially Izhemski Komi, were significantly different from all other populations studied. These can be considered as a second pole of genetic diversity in northern Europe (in addition to the pole, occupied by Finns), as they had a distinct ancestry component. Russians from Mezen and the Finnic-speaking Veps were positioned between the two poles, but differed from each other in the proportions of Komi and Finnic ancestries. In general, our data provides a more complete genetic map of Europe accounting for the diversity in its most eastern (northeastern) populations.
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页数:9
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