Mathematical modeling of circadian rhythms

被引:48
作者
Asgari-Targhi, Ameneh [1 ]
Klerman, Elizabeth B. [1 ]
机构
[1] Harvard Med Sch, Brigham & Womens Hosp, Boston, MA 02115 USA
关键词
biological oscillators; circadian clock; circadian rhythms; dynamic systems; mathematical modeling; statistical modeling; FATIGUE RISK-ASSESSMENT; SUPRACHIASMATIC NUCLEUS; STATISTICAL-ANALYSIS; ALERTNESS SIMULATOR; FUNCTIONAL-ANALYSIS; BIOLOGICAL RHYTHMS; NOCTURNAL RODENTS; GENE-EXPRESSION; LIGHT STIMULI; BREAST-CANCER;
D O I
10.1002/wsbm.1439
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Circadian rhythms are endogenous similar to 24-hr oscillations usually entrained to daily environmental cycles of light/dark. Many biological processes and physiological functions including mammalian body temperature, the cell cycle, sleep/wake cycles, neurobehavioral performance, and a wide range of diseases including metabolic, cardiovascular, and psychiatric disorders are impacted by these rhythms. Circadian clocks are present within individual cells and at tissue and organismal levels as emergent properties from the interaction of cellular oscillators. Mathematical models of circadian rhythms have been proposed to provide a better understanding of and to predict aspects of this complex physiological system. These models can be used to: (a) manipulate the system in silico with specificity that cannot be easily achieved using in vivo and in vitro experimental methods and at lower cost, (b) resolve apparently contradictory empirical results, (c) generate hypotheses, (d) design new experiments, and (e) to design interventions for altering circadian rhythms. Mathematical models differ in structure, the underlying assumptions, the number of parameters and variables, and constraints on variables. Models representing circadian rhythms at different physiologic scales and in different species are reviewed to promote understanding of these models and facilitate their use. This article is categorized under: Physiology > Mammalian Physiology in Health and Disease Models of Systems Properties and Processes > Organ, Tissue, and Physiological Models
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页数:19
相关论文
共 198 条
[1]   Circadian Rhythm Sleep-Wake Disorders [J].
Abbott, Sabra M. ;
Reid, Kathryn J. ;
Zee, Phyllis C. .
PSYCHIATRIC CLINICS OF NORTH AMERICA, 2015, 38 (04) :805-+
[2]  
Abel J.H., 2015, IEEE Life Sci. Lett, V1, P3
[3]   A systems theoretic approach to analysis and control of mammalian circadian dynamics [J].
Abel, John H. ;
Doyle, Francis J., III .
CHEMICAL ENGINEERING RESEARCH & DESIGN, 2016, 116 :48-60
[4]   Coupling governs entrainment range of circadian clocks [J].
Abraham, Ute ;
Granada, Adrian E. ;
Westermark, Pal O. ;
Heine, Markus ;
Kramer, Achim ;
Herzel, Hanspeter .
MOLECULAR SYSTEMS BIOLOGY, 2010, 6
[5]   Modeling circadian rhythm generation in the suprachiasmatic nucleus with locally coupled self-sustained oscillators: Phase shifts and phase response curves [J].
Achermann, P ;
Kunz, H .
JOURNAL OF BIOLOGICAL RHYTHMS, 1999, 14 (06) :460-468
[6]   A neuropeptide speeds circadian entrainment by reducing intercellular synchrony [J].
An, Sungwon ;
Harang, Rich ;
Meeker, Kirsten ;
Granados-Fuentes, Daniel ;
Tsai, Connie A. ;
Mazuski, Cristina ;
Kim, Jihee ;
Doyle, Francis J., III ;
Petzold, Linda R. ;
Herzog, Erik D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (46) :E4355-E4361
[7]   CYCLOPS reveals human transcriptional rhythms in health and disease [J].
Anafi, Ron C. ;
Francey, Lauren J. ;
Hogenesch, John B. ;
Kim, Junhyong .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (20) :5312-5317
[8]  
[Anonymous], 1990, Sleep, V90, P306
[9]  
[Anonymous], 1965, CIRCADIAN CLOCKS
[10]   Gates and oscillators: A network model of the brain clock [J].
Antle, MC ;
Foley, DK ;
Foley, NC ;
Silver, R .
JOURNAL OF BIOLOGICAL RHYTHMS, 2003, 18 (04) :339-350