Halogen bonding versus chalcogen and pnicogen bonding: a combined Cambridge structural database and theoretical study

被引:204
作者
Bauza, Antonio [1 ]
Quinonero, David [1 ]
Deya, Pere M. [1 ]
Frontera, Antonio [1 ]
机构
[1] Univ Illes Balears, Dept Quim, Palma De Mallorca 07122, Baleares, Spain
来源
CRYSTENGCOMM | 2013年 / 15卷 / 16期
关键词
SELF-ASSEMBLED AS2L3; CENTER-DOT-N; MOLECULAR-INTERACTIONS; MENSHUTKIN COMPLEX; CRYSTAL-STRUCTURE; BONDED COMPLEXES; PI INTERACTIONS; DESIGN; TRANSMETALATION; CONFORMATION;
D O I
10.1039/c2ce26741a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this manuscript we analyze the Cambridge Structural Database (CSD) to compare the relative importance of halogen, chalcogen and pnicogen bonding. The three interactions can be explained in terms of electrostatic effects, considering the halogen, chalcogen or pnicogen as a Lewis acid due to the presence of a sigma hole (sigma-hole). We have studied the behaviour of the three interactions considering two types of Lewis bases: amines and arenes. Combining the CSD search and a comprehensive theoretical study (DFT-D3) we conclude that the halogen bonding interaction is the energetically most favourable when the electron donor is an amine. In contrast, the pnicogen bond is the most favourable if the Lewis base is benzene (pnicogen-pi interaction).
引用
收藏
页码:3137 / 3144
页数:8
相关论文
共 79 条
[1]   ELECTRONIC-STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS - THE PROGRAM SYSTEM TURBOMOLE [J].
AHLRICHS, R ;
BAR, M ;
HASER, M ;
HORN, H ;
KOLMEL, C .
CHEMICAL PHYSICS LETTERS, 1989, 162 (03) :165-169
[2]  
[Anonymous], VISTA PROGR AN DISPL
[3]   Halogen bonds in biological molecules [J].
Auffinger, P ;
Hays, FA ;
Westhof, E ;
Ho, PS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (48) :16789-16794
[4]  
Bader R. F. W., 1994, ATOMS MOL QUANTUM TH
[5]   A QUANTUM-THEORY OF MOLECULAR-STRUCTURE AND ITS APPLICATIONS [J].
BADER, RFW .
CHEMICAL REVIEWS, 1991, 91 (05) :893-928
[6]   A comparison of the solid-state structures of a series of phenylseleno-halogen and pseudohalogen compounds, PhSeX (X = Cl, CN, SCN) [J].
Barnes, Nicholas A. ;
Godfrey, Stephen M. ;
Halton, Ruth T. A. ;
Mushtaq, Imrana ;
Parsons, Simon ;
Pritchard, Robin G. ;
Sadler, Mark .
POLYHEDRON, 2007, 26 (05) :1053-1060
[7]   Pnicogen-π complexes: theoretical study and biological implications [J].
Bauza, Antonio ;
Quinonero, David ;
Deya, Pere M. ;
Frontera, Antonio .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2012, 14 (40) :14061-14066
[8]  
Biegler-König F, 2001, J COMPUT CHEM, V22, P545, DOI 10.1002/1096-987X(20010415)22:5<545::AID-JCC1027>3.0.CO
[9]  
2-Y
[10]   A Medicinal Chemist's Guide to Molecular Interactions [J].
Bissantz, Caterina ;
Kuhn, Bernd ;
Stahl, Martin .
JOURNAL OF MEDICINAL CHEMISTRY, 2010, 53 (14) :5061-5084