ArrayExpress update-trends in database growth and links to data analysis tools

被引：276

作者：

Rustici, Gabriella ^{[1
]}

Kolesnikov, Nikolay ^{[1
]}

Brandizi, Marco ^{[1
]}

Burdett, Tony ^{[1
]}

Dylag, Miroslaw ^{[1
]}

Emam, Ibrahim ^{[1
]}

Farne, Anna ^{[2
]}

Hastings, Emma ^{[1
]}

Ison, Jon ^{[1
]}

Keays, Maria ^{[1
]}

Kurbatova, Natalja ^{[1
]}

Malone, James ^{[1
]}

Mani, Roby ^{[1
]}

Mupo, Annalisa ^{[2
]}

Pereira, Rui Pedro ^{[1
]}

Pilicheva, Ekaterina ^{[1
]}

Rung, Johan ^{[1
]}

Sharma, Anjan ^{[1
]}

Tang, Y. Amy ^{[1
]}

Ternent, Tobias ^{[1
]}

Tikhonov, Andrew ^{[1
]}

Welter, Danielle ^{[1
]}

Williams, Eleanor ^{[1
]}

Brazma, Alvis ^{[1
]}

Parkinson, Helen ^{[1
]}

Sarkans, Ugis ^{[1
]}

机构：

[1] EMBL EBI, Funct Genom Team, Hinxton CB10 1SD, England

[2] Wellcome Trust Sanger Inst, Hinxton CB10 1SA, England

来源：

NUCLEIC ACIDS RESEARCH | 2013年 / 41卷 / D1期

基金：

美国国家卫生研究院; 英国生物技术与生命科学研究理事会; 美国国家科学基金会;

关键词：

MICROARRAY DATA; FORMAT; BIOINFORMATICS; MIAME;

D O I：

10.1093/nar/gks1174

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for microarray data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data.

引用

页码：D987 / D990

页数：4

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