CSB: a Python']Python framework for structural bioinformatics

被引：11
作者：
Kalev, Ivan [1 ]
Mechelke, Martin [1 ]
Kopec, Klaus O. [1 ]
Holder, Thomas [1 ]
Carstens, Simeon [1 ]
Habeck, Michael [1 ,2 ]
机构：
[1] Max Planck Inst Dev Biol, Dept Prot Evolut, D-72076 Tubingen, Germany
[2] Max Planck Inst Intelligent Syst, Dept Empir Inference, D-72076 Tubingen, Germany
来源：
BIOINFORMATICS | 2012年 / 28卷 / 22期
关键词：
MONTE-CARLO; PROTEIN; BIOLOGY;
D O I：
10.1093/bioinformatics/bts538
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Computational Structural Biology Toolbox (CSB) is a cross-platform Python class library for reading, storing and analyzing biomolecular structures with rich support for statistical analyses. CSB is designed for reusability and extensibility and comes with a clean, well-documented API following good object-oriented engineering practice.
引用
收藏
页码：2996 / 2997
页数：2
相关论文
共 50 条
  • [21] ColiCoords: A Python']Python package for the analysis of bacterial fluorescence microscopy data
    Smit, Jochem H.
    Li, Yichen
    Warszawik, Eliza M.
    Herrmann, Andreas
    Cordes, Thorben
    PLOS ONE, 2019, 14 (06):
  • [22] PYPARAX - PYTHON']PYTHON MODULE FOR OPTICAL SETUP SIMULATION IN PARAXIAL APPROXIMATION
    Palea, Victor-Cristian
    Preda, Liliana
    UNIVERSITY POLITEHNICA OF BUCHAREST SCIENTIFIC BULLETIN-SERIES A-APPLIED MATHEMATICS AND PHYSICS, 2022, 84 (01): : 191 - 200
  • [23] CELL: a Python']Python package for cluster expansion with a focus on complex alloys
    Rigamonti, Santiago
    Troppenz, Maria
    Kuban, Martin
    Huebner, Axel
    Draxl, Claudia
    NPJ COMPUTATIONAL MATERIALS, 2024, 10 (01)
  • [24] Writing python']python programs to map alleles related to genetic disease
    Allbee, Quinn
    Barber, Robert
    BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION, 2021, 49 (05) : 677 - 678
  • [25] ChemoPy: freely available python']python package for computational biology and chemoinformatics
    Cao, Dong-Sheng
    Xu, Qing-Song
    Hu, Qian-Nan
    Liang, Yi-Zeng
    BIOINFORMATICS, 2013, 29 (08) : 1092 - 1094
  • [26] Introduction to Python']Python Dynamic Diffraction Toolkit (PyDDT): structural refinement of single crystals via X-ray phase measurements
    Penacchio, Rafaela F. S.
    Estradiote, Mauricio B.
    Remedios, Claudio M. R.
    Calligaris, Guilherme A.
    Torikachvili, Milton S.
    Kycia, Stefan W.
    Morelhao, Sergio L.
    JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2023, 56 : 1574 - 1584
  • [27] New Approach to Teach Molecular Biology in High School Using Python']Python
    Sarkar, Sanchita
    Sarkar, Santu
    2016 IEEE REGION 10 HUMANITARIAN TECHNOLOGY CONFERENCE (R10-HTC), 2016,
  • [28] BINANA 2: Characterizing Receptor/Ligand Interactions in Python']Python and Java']JavaScript
    Young, Jade
    Garikipati, Neerja
    Durrant, Jacob D.
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2022, 62 (04) : 753 - 760
  • [29] MoSDeF Cassandra: A complete Python']Python interface for the Cassandra Monte Carlo software
    DeFever, Ryan S.
    Matsumoto, Ray A.
    Dowling, Alexander W.
    Cummings, Peter T.
    Maginn, Edward J.
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2021, 42 (18) : 1321 - 1331
  • [30] ProPythia: A Python']Python package for protein classification based on machine and deep learning
    Sequeira, Ana Marta
    Lousa, Diana
    Rocha, Miguel
    NEUROCOMPUTING, 2022, 484 : 172 - 182
12345