Weighted multiple testing procedures for genomic studies

被引:14
作者
Gui, Jiang [1 ,3 ]
Tosteson, Tor D. [1 ]
Borsuk, Mark [2 ]
机构
[1] Geisel Sch Med, Dept Community & Family Med, Epidemiol & Biostat Sect, Lebanon, NH USA
[2] Dartmouth Coll, Thayer Sch Engn, Hanover, NH 03755 USA
[3] Dartmouth Hitchcock Med Ctr, Lebanon, NH 03756 USA
基金
美国国家卫生研究院;
关键词
False discovery rate; Family-wise error rate; Genomic studies; FALSE DISCOVERY RATE; ASSOCIATION; POWER;
D O I
10.1186/1756-0381-5-4
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
With the rapid development of biological technology, measurement of thousands of genes or SNPs can be carried out simultaneously. Improved procedures for multiple hypothesis testing when the number of tests is very large are critical for interpreting genomic data. In this paper, we review recent developments on three distinct but closely related methods involving p-value weighting to improve statistical power while also controlling for the false discovery rate or the family wise error rate.
引用
收藏
页数:9
相关论文
共 23 条
[1]  
Benjamini Y, 2001, ANN STAT, V29, P1165
[2]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[3]  
Bonferroni C.E., 1935, Studi in Onore del Professore Salvatore Ortu Carboni, P13
[4]   Genetic variation at the ACE gene is associated with persistent microalbuminuria and severe nephropathy in type 1 diabetes [J].
Boright, AP ;
Paterson, AD ;
Mirea, L ;
Bull, SB ;
Mowjoodi, A ;
Scherer, SW ;
Zinman, B .
DIABETES, 2005, 54 (04) :1238-1244
[5]   So many correlated tests, so little time!: Rapid adjustment of P values for multiple correlated tests [J].
Conneely, Karen N. ;
Boehnke, Michael .
AMERICAN JOURNAL OF HUMAN GENETICS, 2007, 81 (06) :1158-1168
[6]   Estimation of significance thresholds for genomewide association scans [J].
Dudbridge, Frank ;
Gusnanto, Arief .
GENETIC EPIDEMIOLOGY, 2008, 32 (03) :227-234
[7]   Large-scale simultaneous hypothesis testing: The choice of a null hypothesis [J].
Efron, B .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2004, 99 (465) :96-104
[8]   Empirical Bayes analysis of a microarray experiment [J].
Efron, B ;
Tibshirani, R ;
Storey, JD ;
Tusher, V .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2001, 96 (456) :1151-1160
[9]  
Efron B, 2004, TECHNICAL REPORT
[10]   Multiple Testing Corrections for Imputed SNPs [J].
Gao, Xiaoyi .
GENETIC EPIDEMIOLOGY, 2011, 35 (03) :154-158