Analytic estimation of statistical significance maps for support vector machine based multi-variate image analysis and classification

被引:84
作者
Gaonkar, Bilwaj [1 ]
Davatzikos, Christos [1 ]
机构
[1] Univ Penn, Sect Biomed Image Anal, Philadelphia, PA 19104 USA
关键词
SVM; Statistical inference; Neuroimaging analysis; VOXEL-BASED MORPHOMETRY; BRAIN STATES; PATTERNS; CONNECTIVITY;
D O I
10.1016/j.neuroimage.2013.03.066
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Multivariate pattern analysis (MVPA) methods such as support vector machines (SVMs) have been increasingly applied to fMRI and sMRI analyses, enabling the detection of distinctive imaging patterns. However, identifying brain regions that significantly contribute to the classification/group separation requires computationally expensive permutation testing. In this paper we show that the results of SVM-permutation testing can be analytically approximated. This approximation leads to more than a thousandfold speedup of the permutation testing procedure, thereby rendering it feasible to perform such tests on standard computers. The speedup achieved makes SVM based group difference analysis competitive with standard univariate group difference analysis methods. (C). 2013 Elsevier Inc. All rights reserved.
引用
收藏
页码:270 / 283
页数:14
相关论文
共 39 条
[1]   Voxel-based morphometry - The methods [J].
Ashburner, J ;
Friston, KJ .
NEUROIMAGE, 2000, 11 (06) :805-821
[2]   Generative-Discriminative Basis Learning for Medical Imaging [J].
Batmanghelich, Nematollah K. ;
Taskar, Ben ;
Davatzikos, Christos .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2012, 31 (01) :51-69
[3]  
Bishop C. M., 2007, Technometrics, DOI DOI 10.1198/TECH.2007.S518
[4]   A tutorial on Support Vector Machines for pattern recognition [J].
Burges, CJC .
DATA MINING AND KNOWLEDGE DISCOVERY, 1998, 2 (02) :121-167
[5]   LIBSVM: A Library for Support Vector Machines [J].
Chang, Chih-Chung ;
Lin, Chih-Jen .
ACM TRANSACTIONS ON INTELLIGENT SYSTEMS AND TECHNOLOGY, 2011, 2 (03)
[6]  
Cherkassky V, 1997, IEEE Trans Neural Netw, V8, P1564, DOI 10.1109/TNN.1997.641482
[7]   Disease State Prediction From Resting State Functional Connectivity [J].
Craddock, R. Cameron ;
Holtzheimer, Paul E., III ;
Hu, Xiaoping P. ;
Mayberg, Helen S. .
MAGNETIC RESONANCE IN MEDICINE, 2009, 62 (06) :1619-1628
[8]   Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome [J].
Cuingnet, Remi ;
Rosso, Charlotte ;
Chupin, Marie ;
Lehericy, Stephane ;
Dormont, Didier ;
Benali, Habib ;
Samson, Yves ;
Colliot, Olivier .
MEDICAL IMAGE ANALYSIS, 2011, 15 (05) :729-737
[9]   Why voxel-based morphometric analysis should be used with great caution when characterizing group differences [J].
Davatzikos, C .
NEUROIMAGE, 2004, 23 (01) :17-20
[10]   Classifying spatial patterns of brain activity with machine learning methods: Application to lie detection [J].
Davatzikos, C ;
Ruparel, K ;
Fan, Y ;
Shen, DG ;
Acharyya, M ;
Loughead, JW ;
Gur, RC ;
Langleben, DD .
NEUROIMAGE, 2005, 28 (03) :663-668