Closed Genome Sequences of Clinical Neisseria gonorrhoeae Strains Obtained from Combined Oxford Nanopore and Illumina Sequencing

被引：0

作者：

White, Richard C. ^{[1
]}

Torralba, Manolito ^{[2
]}

Colt, Kelly ^{[2
]}

Harrison, Frank ^{[2
]}

Goglin, Karrie ^{[2
]}

Nguyen, Kevin ^{[1
]}

D'Souza, Roshan ^{[1
]}

Bristow, Claire C. ^{[3
]}

Ellis, Olivia ^{[4
]}

Soge, Olusegun O. ^{[5
,6
]}

Klausner, Jeffrey D. ^{[7
]}

Fouts, Derrick E. ^{[1
]}

机构：

[1] J Craig Venter Inst, Rockville, MD 20850 USA

[2] J Craig Venter Inst, La Jolla, CA USA

[3] Univ Calif San Diego, Dept Med, Div Infect Dis & Global Publ Hlth, San Diego, CA 92103 USA

[4] Univ Calif Los Angeles, Dept Environm Hlth Sci, Fielding Sch Publ Hlth, Los Angeles, CA USA

[5] Univ Washington, Dept Global & Hlth, Seattle, WA 98195 USA

[6] Univ Washington, Dept Med, Seattle, WA USA

[7] Univ Calif Los Angeles, Dept Med, Div Infect Dis, Los Angeles, CA 90024 USA

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2019年 / 8卷 / 09期

基金：

美国国家卫生研究院;

关键词：

ANNOTATION; RESISTANCE; WGS;

D O I：

10.1128/MRA.00072-19

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Neisseria gonorrhoeae is the etiological agent of gonorrhea, the second most common notifiable disease in the United States. Here, we used a hybrid approach combining Oxford Nanopore Technologies MinION and Illumina MiSeq sequencing data to obtain closed genome sequences of nine clinical N. gonorrhoeae isolates.

引用

页数：4

共 17 条

[1] Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, Anthony M.
Lohse, Marc
Usadel, Bjoern
[J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
[2] LOCUST: a custom sequence locus typer for classifying microbial isolates
Brinkac, Lauren M.
Beck, Erin
Inman, Jason
Venepally, Pratap
Fouts, Derrick E.
Sutton, Granger
[J]. BIOINFORMATICS, 2017, 33 (11) : 1725 - 1726
[3] Demczuk W, 2017, J CLIN MICROBIOL, V55, P1454, DOI [10.1128/jcm.00100-17, 10.1128/JCM.00100-17]
[4] WGS to predict antibiotic MICs for Neisseria gonorrhoeae
Eyre, David W.
De Silva, Dilrini
Cole, Kevin
Peters, Joanna
Cole, Michelle J.
Grad, Yonatan H.
Demczuk, Walter
Martin, Irene
Mulvey, Michael R.
Crook, Derrick W.
Walker, A. Sarah
Peto, Tim E. A.
Paul, John
[J]. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2017, 72 (07) : 1937 - 1947
[5] RefSeq: an update on prokaryotic genome annotation and curation
Haft, Daniel H.
DiCuccio, Michael
Badretdin, Azat
Brover, Vyacheslav
Chetvernin, Vyacheslav
O'Neill, Kathleen
Li, Wenjun
Chitsaz, Farideh
Derbyshire, Myra K.
Gonzales, Noreen R.
Gwadz, Marc
Lu, Fu
Marchler, Gabriele H.
Song, James S.
Thanki, Narmada
Yamashita, Roxanne A.
Zheng, Chanjuan
Thibaud-Nissen, Francoise
Geer, Lewis Y.
Marchler-Bauer, Aron
Pruitt, Kim D.
[J]. NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) : D851 - D860
[6] Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey
Harris, Simon R.
Cole, Michelle J.
Spiteri, Gianfranco
Sanchez-Buso, Leonor
Golparian, Daniel
Jacobsson, Susanne
Goater, Richard
Abudahab, Khalil
Yeats, Corin A.
Bercot, Beatrice
Borrego, Maria Jose
Crowley, Brendan
Stefanelli, Paola
Tripodo, Francesco
Abad, Raquel
Aanensen, David M.
Unemo, Magnus
[J]. LANCET INFECTIOUS DISEASES, 2018, 18 (07) : 758 - 768
[7] Genomic analyses of Neisseria gonorrhoeae reveal an association of the gonococcal genetic island with antimicrobial resistance
Harrison, Odile B.
Clemence, Marianne
Dillard, Joseph P.
Tang, Christoph M.
Trees, David
Grad, Yonatan H.
Maiden, Martin C. J.
[J]. JOURNAL OF INFECTION, 2016, 73 (06) : 578 - 587
[8] Emergence and spread of Neisseria gonorrhoeae clinical isolates harboring mosaic-like structure of penicillin-binding protein 2 in central Japan
Ito, M
Deguchi, T
Mizutani, KS
Yasuda, M
Yokoi, S
Ito, SI
Takahashi, Y
Ishihara, S
Kawamura, Y
Ezaki, T
[J]. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2005, 49 (01) : 137 - 143
[9] WGS analysis and molecular resistance mechanisms of azithromycin-resistant (MIC >2 mg/L) Neisseria gonorrhoeae isolates in Europe from 2009 to 2014
Jacobsson, Susanne
Golparian, Daniel
Cole, Michelle
Spiteri, Gianfranco
Martin, Irene
Bergheim, Thea
Borrego, Maria Jose
Crowley, Brendan
Crucitti, Tania
Van Dam, Alje P.
Hoffmann, Steen
Jeverica, Samo
Kohl, Peter
Mlynarczyk-Bonikowska, Beata
Pakarna, Gatis
Stary, Angelika
Stefanelli, Paola
Pavlik, Peter
Tzelepi, Eva
Abad, Raquel
Harris, Simon R.
Unemo, Magnus
[J]. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2016, 71 (11) : 3109 - 3116
[10] CRYPTIC PLASMID OF NEISSERIA-GONORRHOEAE - COMPLETE NUCLEOTIDE-SEQUENCE AND GENETIC ORGANIZATION
KORCH, C
HAGBLOM, P
OHMAN, H
GORANSSON, M
NORMARK, S
[J]. JOURNAL OF BACTERIOLOGY, 1985, 163 (02) : 430 - 438

← 1 2 →