Genome Sequence of Ralstonia sp Strain PBA, a Bacterium Involved in the Biodegradation of 4-Aminobenzenesulfonate

被引：9

作者：

Gan, Han Ming ^{[1
]}

Chew, Teong Han ^{[2
]}

Tay, Yea-Ling ^{[1
]}

Lye, Siew Fen ^{[1
]}

Yahya, Adibah ^{[3
]}

机构：

[1] ScienceVis SB, Shah Alam, Selangor, Malaysia

[2] Univ Teknol Malaysia, Dept Biol Sci, Fac Biosci & Bioengn, Skudai, Johor, Malaysia

[3] Univ Teknol Malaysia, Dept Ind Biotechnol, Fac Biosci & Bioengn, Skudai, Johor, Malaysia

来源：

JOURNAL OF BACTERIOLOGY | 2012年 / 194卷 / 18期

关键词：

ANNOTATION;

D O I：

10.1128/JB.01165-12

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Ralstonia sp. strain PBA was isolated from textile wastewater in a coculture with Hydrogenophaga sp. strain PBC. Here we present the assembly and annotation of its genome, which may provide further insights into the mechanism of its interaction with strain PBC during 4-aminobenzenesulfonate degradation.

引用

收藏

页码：5139 / 5140

页数：2

相关论文

共 10 条

[1] Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research [J].

Conesa, A ;

Götz, S ;

García-Gómez, JM ;

Terol, J ;

Talón, M ;

Robles, M .

BIOINFORMATICS, 2005, 21 (18) :3674-3676

[2] Cloning and functional analysis of the genes coding for 4-aminobenzenesulfonate 3,4-dioxygenase from Hydrogenophaga sp PBC [J].

Gan, Han Ming ;

Shahir, Shafinaz ;

Yahya, Adibah .

MICROBIOLOGY-SGM, 2012, 158 :1933-1941

[3] Biodegradation of 4-aminobenzenesulfonate by Ralstonia sp PBA and Hydrogenophaga sp PBC isolated from textile wastewater treatment plant [J].

Gan, Han Ming ;

Shahir, Shafinaz ;

Ibrahim, Zaharah ;

Yahya, Adibah .

CHEMOSPHERE, 2011, 82 (04) :507-513

[4] The beta-ketoadipate pathway and the biology of self-identity [J].

Harwood, CS ;

Parales, RE .

ANNUAL REVIEW OF MICROBIOLOGY, 1996, 50 :553-590

[5] Prodigal: prokaryotic gene recognition and translation initiation site identification [J].

Hyatt, Doug ;

Chen, Gwo-Liang ;

LoCascio, Philip F. ;

Land, Miriam L. ;

Larimer, Frank W. ;

Hauser, Loren J. .

BMC BIOINFORMATICS, 2010, 11

[6] RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].

Lagesen, Karin ;

Hallin, Peter ;

Rodland, Einar Andreas ;

Stærfeldt, Hans-Henrik ;

Rognes, Torbjorn ;

Ussery, David W. .

NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108

[7] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].

Lowe, TM ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964

[8] Genome sequence of the bioplastic-producing "Knallgas" bacterium Ralstonia eutropha H16 [J].

Pohlmann, Anne ;

Fricke, Wolfgang Florian ;

Reinecke, Frank ;

Kusian, Bernhard ;

Liesegang, Heiko ;

Cramm, Rainer ;

Eitinger, Thomas ;

Ewering, Christian ;

Poetter, Markus ;

Schwartz, Edward ;

Strittmatter, Axel ;

Voss, Ingo ;

Gottschalk, Gerhard ;

Steinbuechel, Alexander ;

Friedrich, Baerbel ;

Bowien, Botho .

NATURE BIOTECHNOLOGY, 2006, 24 (10) :1257-1262

[9] Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence [J].

Remenant, Benoit ;

Coupat-Goutaland, Benedicte ;

Guidot, Alice ;

Cellier, Gilles ;

Wicker, Emmanuel ;

Allen, Caitilyn ;

Fegan, Mark ;

Pruvost, Olivier ;

Elbaz, Mounira ;

Calteau, Alexandra ;

Salvignol, Gregory ;

Mornico, Damien ;

Mangenot, Sophie ;

Barbe, Valerie ;

Medigue, Claudine ;

Prior, Philippe .

BMC GENOMICS, 2010, 11

[10] Ralstonia pickettii in environmental biotechnology:: potential and applications [J].

Ryan, M. P. ;

Pembroke, J. T. ;

Adley, C. C. .

JOURNAL OF APPLIED MICROBIOLOGY, 2007, 103 (04) :754-764