Multiconfigurational and DFT analyses of the electromeric formulation and UV-vis absorption spectra of the superoxide adduct of ferrous superoxide reductase

被引:12
作者
Attia, Amr A. A. [1 ]
Cioloboc, Daniela [2 ]
Lupan, Alexandru [1 ]
Silaghi-Dumitrescu, Radu [1 ]
机构
[1] Univ Babes Bolyai, Dept Chem, Fac Chem & Chem Engn, Cluj Napoca, Romania
[2] Univ Texas San Antonio, Dept Chem, San Antonio, TX 78249 USA
关键词
Superoxide reductase; SOR; CASSCF; TD-DFT; Non-heme iron; Electromerism; VERTICAL EXCITATION-ENERGIES; ARCHAEOGLOBUS-FULGIDUS; ELECTRONIC-STRUCTURE; ACTIVE-SITE; DESULFOARCULUS-BAARSII; DESULFOVIBRIO-VULGARIS; OXYGEN DETOXIFICATION; DENSITY FUNCTIONALS; TREPONEMA-PALLIDUM; IRON;
D O I
10.1016/j.jinorgbio.2016.09.017
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The putative initial adduct of ferrous superoxide reductase (SOR) with superoxide has been alternatively formulated as ferric-peroxo or ferrous-superoxo. The similar to 600-nm UV-vis absorption band proposed to be assigned to this adduct (either as sole intermediate in the SOR catalytic cycle, or as one of the two intermediates) has recently been interpreted as due to a ligand-to-metal charge transfer, involving thiolate and superoxide in a ferrous complex, contrary to an alternative assignment as a predominantly cysteine thiolate-to-ferric charge transfer in a ferric-peroxo electromer. In an attempt to clarify the electromeric formulation of this adduct, we report a computational study using a multiconfigurational complete active space self-consistent field (MC-CASSCF) wave function approach as well as modelling the UV-vis absorption spectra with time-dependent density functional theory (TD-DFT). The MC-CASSCF calculations disclose a weak interaction between iron and the dioxygenic ligand and a dominant configuration with an essentially ferrous-superoxo character. The computed UV-vis absorption spectra reveal a marked dependence on the choice of density functional - both in terms of location of bands and in terms of orbital contributors. For the main band in the visible region, besides the recently reported thiolate-to-superoxide charge transfer, a more salient, and less functional-dependent, feature is a thiolate-toferric iron charge transfer, consistent with a ferric-peroxo electromer. By contrast, the computed UV-vis spectra of a ferric-hydroperoxo SOR model match distinctly better (and with no qualitative dependence on the DFT methodology) the 600-nm band as due to a mainly thiolate-to-ferric character - supporting the assignment of the SOR "600-nm intermediate" as a S = 5/2 ferric-hydroperoxo species. (C) 2016 Elsevier Inc. All rights reserved.
引用
收藏
页码:49 / 53
页数:5
相关论文
共 58 条
[51]   Gas-phase thermochemistry of ruthenium carbene metathesis catalysts [J].
Torker, Sebastian ;
Merki, Daniel ;
Chen, Peter .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (14) :4808-4814
[52]   Relationship between long-range charge-transfer excitation energy error and integer discontinuity in Kohn-Sham theory [J].
Tozer, DJ .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (24) :12697-12699
[53]   Improving virtual Kohn-Sham orbitals and eigenvalues: Application to excitation energies and static polarizabilities [J].
Tozer, DJ ;
Handy, NC .
JOURNAL OF CHEMICAL PHYSICS, 1998, 109 (23) :10180-10189
[54]   The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals [J].
Zhao, Yan ;
Truhlar, Donald G. .
THEORETICAL CHEMISTRY ACCOUNTS, 2008, 120 (1-3) :215-241
[55]   Density functionals with broad applicability in chemistry [J].
Zhao, Yan ;
Truhlar, Donald G. .
ACCOUNTS OF CHEMICAL RESEARCH, 2008, 41 (02) :157-167
[56]   A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions [J].
Zhao, Yan ;
Truhlar, Donald G. .
JOURNAL OF CHEMICAL PHYSICS, 2006, 125 (19)
[57]   Benchmark Energetic Data in a Model System for Grubbs II Metathesis Catalysis and Their Use for the Development, Assessment, and Validation of Electronic Structure Methods [J].
Zhao, Yan ;
Truhlar, Donald G. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2009, 5 (02) :324-333
[58]   Representative benchmark suites for barrier heights of diverse reaction types and assessment of electronic structure methods for thermochemical kinetics [J].
Zheng, Jingjing ;
Zhao, Yan ;
Truhlar, Donald G. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2007, 3 (02) :569-582